You can also convert, eg, thickness, to mgz
mri_convert lh.thickness lh.thickness.mgz
Then load the mgz in matlab, eg,
th = MRIread('lh.thickness.mgz');
then replace the pixel data with your own
th.vol = YourData;
Then write out the result
MRIwrite(th,'lh.yourdata.mgz');
On 5/19/2019 5:26 PM, Bruc
Hi Amanda
for a surface overlay M is irrelevant (it is a vox2ras or ras2vox matrix,
can't remember what). Just give it eye(4). If you are in fsaverage coords
I believe it is already in MNI space. If you want to convert to a volume
you can use mri_surf2vol
cheers
Bruce
On Sun, 19 May 2019, Wo
External Email - Use Caution
Hi,
I am working with cortical thickness data in matlab and I have a t-statistic
map that I'd like to firstly write to .mgh/mgz format so that I can overlay it
in freeview. And secondly, convert it to MNI space and write it out as a volume
(preferab
