[Freesurfer] Obtaining stats for a custom label

External Email - Use Caution Hello Freesurfer developers, I am using the code below to generate the stats table for the ROI. mris_anatomical_stats -l /working/ABCD/FS2/7583b4bc-b8fc-4390-8504-1a495b70d2bc/subject/label/rh.custom.label -b subject rh white However, when I run thi

Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution I made a new qdec file in my subject directory (not capitalizing 'qdec') and the problem was solved :) Thank you so much. I really appreciate all your help Avi On Tue, Apr 23, 2019 at 2:57 PM Pan Yunzhi wrote: > External Email - Use Caution

Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution You should edit your .Qdecrc file in your SUBJECTS_DIR/qdec folder. Don't capitalize qdec. Sent from Mail for Windows 10 From: Avi Gharehgazlou Sent: Tuesday, April 23, 2019 2:27 PM To: Freesurfer support list Subject: Re: [Freesu

Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution In .Qdecrc file, you can only see this line, except you add somethings else. If all of these were settled down, it should work. Is there any error in your command windows? Sent from Mail for Windows 10 From: Avi Gharehgazlou Sent: Tuesday, April 23

Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution Where should I type "ctrl +H"? In my linux terminal (in QDEC) folder? when I do that it gives this error: bash: ctrl + H: command not found When I open my .Qdecrc file (with geddit) I see the MEASURE1 = pial_lgi in the file (but not all the other lines

Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution I guess the .Qdecrc file have already in your qdec folder. Try “ctrl + H” to see the hiden file and write MEASURE1 = pial_lgi into .Qdecrc file. Sent from Mail for Windows 10 From: Avi Gharehgazlou Sent: Tuesday, April 23, 2019 1:34 PM To: Freesurfer

Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution Yes I did On Tue, Apr 23, 2019 at 12:59 PM Pan Yunzhi wrote: > External Email - Use Caution > > Did you run this command “recon-all -s my_subject_id -qcache -measure > pial_lgi” before？ If not， you should run this. > > > > Sent from Mail

Re: [Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution Did you run this command “recon-all -s my_subject_id -qcache -measure pial_lgi” before？ If not， you should run this. Sent from Mail for Windows 10 From: Avi Gharehgazlou Sent: Tuesday, April 23, 2019 12:06 PM To: Freesurfer support list Subject: [Fre

[Freesurfer] LGI in QDEC menu please respond soon

External Email - Use Caution Hi experts, To give more detail re my previous post I have created the .Qdecrc file in my Subjects directory and QDEC folder, which contains one line : MEASURE1 = pial_lgi . However, LGI is still not appearing in the drop down menu on QDEC. When I

[Freesurfer] Putting LGI in drop down menu of QDEC

External Email - Use Caution To give more detail re my previous post I have created the .Qdecrc file in my Subjects directory and QDEC folder, which contains one line : MEASURE1 = pial_lgi . However, LGI is still not appearing in the drop down menu on QDEC. When I do command

Re: [Freesurfer] ERROR! FOV=265.909 > 256

Hi Ani can you send us the recon-all.log file and your full command line? thanks Bruce On Tue, 23 Apr 2019, Anik Dar wrote: External Email - Use Caution Hello All, I am running recon-all highres on 10 7T MP2RAGE datasets that has been skull striped and in two subjects, I

[Freesurfer] Putting LGI in QDEC menu

External Email - Use Caution Hi experts, I was able to put LGI in my QDEC drop down menu in the past by following instructions on FW wiki and archives. However, I am doing some more analyses now and unfortunately I can't seem to bring LGI in my QDEC repeating what I have done in t

[Freesurfer] ERROR! FOV=265.909 > 256

External Email - Use Caution Hello All, I am running recon-all highres on 10 7T MP2RAGE datasets that has been skull striped and in two subjects, I get the following error - I tried the suggested workaround ie I included the flag -cw256 but that didnt help and I got the error ag

Re: [Freesurfer] CORRECTING DEFECT 1 problem

External Email - Use Caution Dear Prof.Bruce, I am sending my raw data and the images that you requested to send. I have two datasets that I got trouble with. I appreciate if you can take a look at this data. Thank you very much in advance. Best regards, Ruwan Freesurfer-ruwan.z

[Freesurfer] The 2nd International Workshop on Machine Learning in Clinical Neuroimaging (MLCN 2019): ENTERING THE ERA OF BIG DATA VIA TRANSFER LEARNING AND DATA HARMONIZATION

External Email - Use Caution Dear Colleagues,We are delighted to invite you to join us for the MLCN 2019 workshop as a satellite event of the MICCAI 2019 conference, Shenzhen, China. Call for Papers Recent advances in neuroimaging and machine learning provide