Re: [Freesurfer] Welch's t-test for HOV violation

Hi Hannah, please include the previous correspondence so that we have context. Also, please remember to post to the list and not to us personally. thanks! doug On 3/13/19 10:52 PM, Hannah CK wrote: External Email - Use Caution Hi Dr. Greve, Thank you for this response. Can extracting

[Freesurfer] ?????? Error with mri_label2label(Segmentation fault(coredumped))

External Email - Use Caution Sure.This is the full terminal output: root@zourushi-All-Series:/usr/local/freesurfer/subjects/PT1_4# mri_label2label --srclabel label/4gt.label --s PT1_4 --trglabel 4gtreg.label --hemi rh --paint 30 pial --trgsurf pial Could not set locale No su

Re: [Freesurfer] Segmentation fault

External Email - Use Caution > On March 13, 2019 at 9:18 PM Donatienne Van Weehaeghe > wrote: > The code I tried to run: > > #mri_gtmpvc --i SUVR_cerebellum.nii.gz --reg suv.reg.lta --psf 5 --seg > /gtmseg.mgz --default-seg-merge --auto-mask 5 0.01 --rbv --o > gtmpvc.output.su

[Freesurfer] Segmentation fault

External Email - Use Caution Dear, I encountered the following error when I tried to run mri_gtmpvc -- rbv: Segmentation fault (core dumped) First I performed the PET to orig registration using spmregister, secondly I tried with the registration using mri_coreg but the error

[Freesurfer] subcortical segmentation

External Email - Use Caution Dear Freesurfer community, Our group is using the new FreeSurfer 6.0 (dev) subcortical segmentation scripts on HCP data (Freesurfer 5.3) segmentHA_T2.sh segmentThalamicNuclei.sh We have successfully segmented the three structures 1. lh.hippo

[Freesurfer] Matlab error in Freesurfer

External Email - Use Caution Dear Freesurfer experts, I am trying to run Freesurfer commands (eg. mri_ca_label) using Matlab in a Mac computer (macOS High Sierra 10.13.6 version) and I'm receiving the following error that I suspect are due to library incompatibilities: dyld: laz

Re: [Freesurfer] Thalamic nuclei longitudinal analysis

External Email - Use Caution Dear Antti, There’s no specific longitudinal version of the thalamic nuclei yet (hopefully one day…) You could naively segment the subjects in a cross-sectional fashion, but I’d highly recommend that you run the main longitudinal stream first (https:

[Freesurfer] Thalamic nuclei longitudinal analysis

External Email - Use Caution Dear FS experts, I'm using the thalamic nuclei segmentation on T1-images. Is it possible to perform longitudinal analysis with this data, or could I just segment the different time points separately to see volume reduction of specific nuclei? Best, An