Re: [Freesurfer] mpr2mni305 failed, during recon-all

2018-12-24 Thread Glasser, Matthew
External Email - Use Caution After the holidays. Matt. From: mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Shachar Gal mailto:gal.shac...@gmail.com>> Reply-To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Monday, December 24, 2018 at 8:1

Re: [Freesurfer] Finding the surface vertex for a voxel in the cortex

2018-12-24 Thread Bruce Fischl
yes, we have code that builds a spatial lookup table, and uses it to do a fast lookup of the closest vertex (it is in mrishash.c). cheers Bruce On Mon, 24 Dec 2018, ts...@rcmd.org wrote: External Email - Use Caution Dear Bruce, thanks for the answer, makes sense. I just wanted to

Re: [Freesurfer] Finding the surface vertex for a voxel in the cortex

2018-12-24 Thread ts+ml
External Email - Use Caution Dear Bruce, thanks for the answer, makes sense. I just wanted to ask: does any FreeSurfer tool solve the same problem? Because if so, I guess it would make sense if my code used the same algorithm. Tim > On December 20, 2018 at 5:54 PM Bruce Fischl

Re: [Freesurfer] mpr2mni305 failed, during recon-all

2018-12-24 Thread Shachar Gal
External Email - Use Caution good to hear. looking forward to it. any estimation as to when it will be ready? Shachar On Mon, 24 Dec 2018 at 14:25, Glasser, Matthew wrote: > External Email - Use Caution > > We’re working on a FS 6.0+ compatible version of the HCP pipeli

Re: [Freesurfer] mpr2mni305 failed, during recon-all

2018-12-24 Thread Glasser, Matthew
External Email - Use Caution We’re working on a FS 6.0+ compatible version of the HCP pipelines and FreeSurfer that is almost ready. Matt. From: mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Shachar Gal mailto:gal.shac...@gmail.com>> Reply-To: Freesurfer support

Re: [Freesurfer] mpr2mni305 failed, during recon-all

2018-12-24 Thread Shachar Gal
External Email - Use Caution yes, it is version 5.3.0-HCP fsbuilds answered that I should upgrade to version 6, but im afraid that it lacks the changes you made so the version will suit the HCP Pipelines... what do you suggest? thanks, Shachar On Sun, 23 Dec 2018 at 17:00, Shach