[Freesurfer] cannot find subject

2018-04-28 Thread Jacobs, H (NP)
External Email - Use Caution Dear FreeSurfer, I just installed FreeSurfer6 on my computer and tried to run a subject (license file is set). I sourced freesurfer and have set the subjects_dir. However, when running the recon-all, I get the following error : ERROR: cannot find /A

[Freesurfer] wmparc.mgz transformation

2018-04-28 Thread Rongxiang Tang
External Email - Use Caution Dear All, I would like to transform individual wmparc.mgz into MNI space for each of my subjects. I have tried using this command:mri_vol2vol --targ /data/mri/wmparc.mgz --mov /usr/local/fsl/data/standard/MNI152_T1_2mm.nii.gz --inv --reg /usr/local/

Re: [Freesurfer] POST-DOCTORAL FELLOWSHIP IN NEUROIMAGING

2018-04-28 Thread Xiaosong He
External Email - Use Caution POST-DOCTORAL FELLOWSHIP IN NEUROIMAGINGTHOMAS JEFFERSON UNIVERSITY/ SIDNEY KIMMEL MEDICAL COLLEGE, PHILA., PA. The Department of Neurology at Thomas Jefferson University/Jefferson Medical College has an opening for a Two-Year Postdoctoral Research Fel

[Freesurfer] Motion Parameter on the Cortical Surface

2018-04-28 Thread Pfannmoeller, Joerg Peter
Dear all, in fMRI analyses the translation of the the brains center and the rotation of the associated coordinate system are determined. Did anybody of you ever write a tool to determine the corresponding motion of the cortical surfaces? What I mean is the total shift due to translation and ro