Re: [Freesurfer] Recon-all w/ Hammersmith atlas

External Email - Use Caution Hi Doug, I just wanted to follow up on this. Were you able to download the zip file ok? Best, Ryan On 4/18/18, 10:46 AM, "Ryan Flores" wrote: Yes, of course. Please see attached. Best, Ryan -- Ryan Flores Cl

Re: [Freesurfer] resting state motion censoring

External Email - Use Caution Hi Freesurfer team & Doug, Thought I would check in again about censoring volumes and using fcseedcor. I was thinking about if it hasn't been incorporated yet -- could I create my own first level covariate .dat file and run fcseedcor on a per subject

Re: [Freesurfer] Surface projection w/ FLIRT Coreg

Yes, use lta_convert with the FSL input flag. On 4/23/18 1:01 PM, Lauren Beard wrote: Hi FreeSurfer Team, We would like to project functional volumes to an FS average surface in a number of large datasets (several thousand scans). We have already calculated and conducted detailed QA on co-

[Freesurfer] Surface projection w/ FLIRT Coreg

External Email - Use Caution Hi FreeSurfer Team, We would like to project functional volumes to an FS average surface in a number of large datasets (several thousand scans). We have already calculated and conducted detailed QA on co-registrations from the functional to structural

[Freesurfer] Query regarding creation of atlas directly from probabilistic information

External Email - Use Caution Dear All and Bruce, This mail is on top of the query I had a couple of weeks back where I misinterpreted that I had binary mask of each structure as individual nifti volume files but on closer look, the nifti files had the probability that the struc