[Freesurfer] correcting deffect

2018-04-22 Thread Z Hessam
External Email - Use Caution Hello FreeSurfer Team i have problem when run a data set, i re-run it but that error remain (just "convex hull" changed from 6148 to 6147!!) this is the last line in terminal (that process doesn't exceed that after about 10 hours!!!) "CORRECTING DEFEC

[Freesurfer] curv to label

2018-04-22 Thread Christiane Jockwitz
External Email - Use Caution Dear FreeSurfer experts, I would like to extract some surface values from the Cognitive Ontology maps from Yeo and collegues (2015). These maps are available in terms of curvature files. However, I would need them in terms of labels or annotations. Is

[Freesurfer] ERROR: nu_correct

2018-04-22 Thread Dusan Hirjak
External Email - Use Caution Dear Freesurfer Experts, I am having trouble with recon-all (Freesurfer 6.0). After running a shell script on my subjects I get the following error: Iteration 1 Fri Apr 20 13:22:37 CEST 2018 nu_correct -clobber ./tmp.mri_nu_correct.mni.14731/nu0.mn