thank you indeed.
On Mon, Jan 1, 2018 at 1:50 AM, Douglas Greve
wrote:
> Use tkmeditfv and tksurferfv and it will bring up freeview instead.
>
> On 12/26/17 4:17 AM, N Saf wrote:
>
> Dear FreeSurfer experts,
>
> I am trying to view the Feat on volume and surface by following commands:
>
>
> tkme
Dear Friend,
I am trying to run this command using the last version of Freesurfer:
mris_convert --combinesurfs my-left-surface.mgz my-right-surface.mgz
lh.rh.asc
But I receive this error:
No such file or directory
freadFloat: fread failed
The input data file are inside the root directory. I t
Thank you very much Douglas for answering. I will do it.
Happy New Year :)
Rosalia
El 31 dic. 2017 23:24, "Douglas Greve" escribió:
> Use preproc-sess to do the concatnation. If that does not work, you can do
> it by hand with mri_concat
>
> On 12/26/17 7:49 PM, Rosalia Dacosta Aguayo wrote:
>
>
No, not by default
On 12/27/17 12:33 AM, shi yao wang wrote:
Dear FS experts:
Can I use FS to detect white matter lesion using FLARE imaging?
Where can I find the command.
Thanks
Lawrence
Radiology Department
Emory University
___
Freesurfer mailin
This is not necessarily a problem. Do the surfaces look ok? You can
always check the defect fixing using the defect-seg script. Run it with
--help to get more info
On 12/27/17 12:28 AM, shi yao wang wrote:
Dear FS experts,
I am running FS 6.0. There is a error message like this.
Inline image
No, nothing specific. We're just that good (or lucky:).
On 12/26/17 9:51 AM, Xiaosong He wrote:
Dear experts,
I recently accidentally found that the v6.0 version of freesurfer
did a nice job on brain with resection (i.e., clear resection for
brain tumor or epilepsy). I am wondering was t
Use preproc-sess to do the concatnation. If that does not work, you can
do it by hand with mri_concat
On 12/26/17 7:49 PM, Rosalia Dacosta Aguayo wrote:
Dear FreeSurfer team,
Sorry for double posting, but I have realized that in my previous
email I posted some ideas that were not intended fo
Use tkmeditfv and tksurferfv and it will bring up freeview instead.
On 12/26/17 4:17 AM, N Saf wrote:
Dear FreeSurfer experts,
I am trying to view the Feat on volume and surface by following commands:
tkmedit bert orig.mgz -aux brain.mgz
-overlay ./fbert1.feat/stats/zstat1.nii.gz
-overla
No. You could it in matlab by setting all of the left (or right)
segments to 0, eg,
a = MRIread('aseg.mgz');
ind = find(a.vol == 17); % Left hippo
a.vol(ind) = 0; % Set all left hippo to 0
and so on for the other segments
On 12/26/17 12:24 AM, Fereshte wrote:
Dear Experts,
I'd appreciate y
Sorry, we don't have tools to do this.
On 12/24/17 5:32 PM, Russell Butler wrote:
hello, i was wondering if it is possible to estimate
skull/scalp thickness using freesurfer? if so does anyone know how
this can be accomplished?
thanks,
Russell Butler
_
In theory it is because the F can be converted to a p which can be
converted into a pseudo-z. When you run mri_glmfit-sim, you should make
sure to use an unsigned test ("abs")
On 12/22/17 8:08 PM, basile pinsard wrote:
Hi Freesurfer experts.
Does mri_glmfit-sim Monte-Carlo cluster size correc
It is appropriate. The F-test is not the same as t-test, so it is not
totally surpising that you get different results
On 12/22/17 5:06 PM, Pauline Duret wrote:
Hello all,
I am running a gyrification analysis between 3 groups.
So I modeled my GLM like the one on this page:
https://surfer.nmr
Did you check the aseg.mgz? It looks like the anterior portions of right
putamen, caudate, ventricle were not labeled properly.
On 12/22/17 1:29 PM, Romella Durrani wrote:
Hi,
I'm having problems with the surfaces along the midline for one scan.
I have attached pictures of the brainmask with
If the resolution is around 1mm, it should be possible. If it is > 1.3,
then surfaces will probably not be valid, but subcortical may be ok.
On 12/22/17 7:11 AM, Gernot Ernst wrote:
I would like to analyze clincial structural MRI exams with help of
Freesurfer. Is it generally possible without
I don't know what you mean. Can you elaborate?
On 12/27/17 7:40 PM, yoichiro takayanagi wrote:
Dear FS experts,
I’m wondering whether the Monte-Carlo simulation accountｓ for spatial
or intensity thresholds (or both).
Thanks,
Yoichiro Takayanagi
__
Probably not because of the voxel size. First, check the registration.
If it looks ok, then you can re-run with -no-talcheck. If it does, not
look good, then fix it and rerun.
On 12/28/17 6:15 PM, 박경일 wrote:
Dear experts, I am sorry for asking again.
I have some problems in running recon-all
I don't know anythinga about fieldtrip, and the discrepancy could be in
they way it interprets coordsinates. See this
https://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems
Does it look ok if you look at it in freeview?
On 12/28/17 7:29 PM, Dorothy Sincasto wrote:
Hi
I've been struggli
If you are asking whether you can mix versions of FS, the answer is no.
You should analyze all your data using a single version.
On 12/30/17 3:27 AM, Giovanni de Marco wrote:
Hello,
I’ve got a question concerning qdec running with freesurfer. I just
downloaded the latest version of freesurfe
What is your mkanalysis-sess command line?
On 12/28/17 8:53 AM, std...@virgilio.it wrote:
Running the "selxavg3-sess -s" command line in FS-FAST for seed-based
functional connectivity analysis
the following errors occurred:
--
Temporally filtering
Error using chol
Dear Shadia,
please check, that you really edited your recon.all, as I suggested in my
previous mail. Your recon-all file is located here:
/home/s1163658/freesurferv60/bin/recon-all
According to your recon-all.log, there is still an ln -s command invoked (which
should be replaced by cp command)
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