Re: [Freesurfer] Recon-all error

Hi Emma, Thanks for your reply. I just tried running the recon-all process from the beginning using the -all flag and it seems to have fixed whatever the error was and the processing completed successfully. Kind regards, Bronwyn Overs Research Assistant Neuroscience Research Australia Margarete

Re: [Freesurfer] Error with recon-all long

Hi Martin, Thanks for your suggestion, I will try rerunning the base from scratch to see if this makes a difference. With regards to the base and time-point IDs, those included in the files I sent you were actually not the IDs we use. I did a find and replace to remove our actual IDs in case t

[Freesurfer] time.dat file in Kinetic Modelling MRTM1 step - Petsurfer processing

Hi team, Could anyone please tell how to create the time.dat file in the Kinetic Modelling MRTM1 step mri_glmfit --y km.hb.tac.nii.gz --mrtm1 km.ref.tac.dat time.dat --o mrtm1 --no-est-fwhm --nii.gz Regards, Janani ::DISCLAIMER:: -

Re: [Freesurfer] Freesurfer PIB PET image processing

Thanks for your reply Douglas. Below is the data I have in my gtm.stats.dat file. 12 Left-Cerebral-White-Matter wm13878965391.648 0.858 0.1584 27 Left-Cerebellum-White-Matterwm 9431 5373.205 0.976 0.2046 3

[Freesurfer] Run stats for both hemisphere?

Dear freesurfer experts, I am wring to ask a stupid question, which I did not find the answer in the mailing list. I am going to run stats on the thickness data as described in the tutorial, do I have to run separately for each hemisphere? If I am not wrong, we have to specify the hemi in the da