glad it worked out
Bruce
On Mon, 10 Jul 2017, Nicolette Schwarz wrote:
Thanks so much, that works!
I did try that but didn't realize that I need to specify both
$SUBJECTS_DIR/sub/surf/lh.thickness.fwhm10.fsaverage.mgh as well as
$SUBJECTS_DIR/fsaverage/surf/lh.sphere.reg explicitely (wanted to p
do you actually mean the average of the (xyz) surface locations or do you
mean the average/difference of scalar fields over the surface?
On Mon, 10 Jul 2017, Van Der Deijl, Rosanne wrote:
> Dear Freesurfer team,
>
> Is it possible to add/subtract/compute the average of freesurfer surface
> .mgh
Dear Freesurfer team,
Is it possible to add/subtract/compute the average of freesurfer surface .mgh
files? And how would I do this?
Thank you in advance.
Kind regards,
Rose
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Dear Freesurfer team,
I have two more questions about mri_glmfit-sim.
1. In the summary file I get a list of all the inputs/outputs, but I don't
understand what all of them mean. Could you explain the ones I highlighted in
bold?
2. Is it possible to a priori set the area threshold, so that I o
Thanks so much, that works!
I did try that but didn't realize that I need to specify both
$SUBJECTS_DIR/sub/surf/lh.thickness.fwhm10.fsaverage.mgh as well as
$SUBJECTS_DIR/fsaverage/surf/lh.sphere.reg explicitely (wanted to print
from sub/surf and so thought that I'd only need to specify the other
?Hi list,
I am trying to run mri_glmfit on a group of subjects using the --frame-mask
flag because I want the design to be changed based on which subjects have a
value at a single voxel. This is because I have one subject in my group whose
signal was cut off through parts of their occipital an
it's because you are still loading the individual subject sphere.reg. Try
using $SUBJECTS_DIR/fsaverage/surf/lh.sphere.reg as the surface instead of
lh.sphere.reg
cheers
Bruce
On Mon, 10 Jul 2017, Nicolette Schwarz wrote:
Hi Bruce,
Thank you for your answer!
I have tried:
but get th
1. Yes, I believe that is true.
2. Why would you lose earlier corrections? In general we keep all edits
cheers
Bruce
On
Mon, 10 Jul 2017, Gabor Perlaki wrote:
> Somehow, my last email didn't appear on the Freesurfer forum. I'm resending
> it without the attachments.
>
> Dear Bruce,
>
> I'm n
Thanks!
On Mon, 10 Jul 2017 at 15:08, Bruce Fischl
wrote:
> Gyrus and Sulcus I imagine, but I'll cc Christophe so he can chime in
>
>
> On Mon, 10 Jul 2017, Leanne Hunt wrote:
>
> > Hi,
> > I am currently using free surfer to analyse my brain imaging and i was
> > wondering if you could tell me
Hi Bruce,
Thank you for your answer!
I have tried: mris_convert -c lh.thickness.fwhm10.fsaverage.mgh
lh.sphere.reg test.asc
but get this: ERROR: number of vertices in
lh.thickness.fwhm10.fsaverage.mgh does not match surface (163842,141823)
Why might that be?
Thank you in advance!
Nic
On Satu
Hi All,
I was hoping someone can help me with two naive questions I have:
I have read on the Freesufer wiki that you should smooth surface data
before analyzing. Should I smooth the data only after I have ran recon-all
and have made edits? Also, should volumetric data be smoothed or is this
limit
Somehow, my last email didn't appear on the Freesurfer forum. I'm resending
it without the attachments.
Dear Bruce,
I'm not interested in the chiasm, but the medialorbitofrontal cortex would
be interesting. In most of the subjects pial and white surfaces intrude
into the area around the optic chi
Gyrus and Sulcus I imagine, but I'll cc Christophe so he can chime in
On Mon, 10 Jul 2017, Leanne Hunt wrote:
Hi,
I am currently using free surfer to analyse my brain imaging and i was
wondering if you could tell me what G_S stands for in the
rh.aparc.a2009s.stats and lh.aparc.a2009s.stats fol
Hi,
I am currently using free surfer to analyse my brain imaging and i was
wondering if you could tell me what G_S stands for in the
rh.aparc.a2009s.stats and lh.aparc.a2009s.stats folders?
for example:
G_and_S_frontomargin
Many thanks
Leanne
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