Hi Paul,
I did the following steps
1. Save the file into $FREESURFER/bin (you might need to modify permissions)
2. Create a list of GTM directories from the subjects
for i in `cat list_of_subjects`; do echo $i/gtmpvc.output >> gtmdirlist
3. Run gtmstats2table with gtmdirlist as the input
g
Dear FreeSurfer team
I am correcting some structural MRI scans after the automated surface-based
analysis and the automated segmentation.
I would like to know if you have any information about how often the Voxel Edit
is used and if it makes sense to correct the subcortical segmentation. I have
Dear all,
I use Freesurfer 6. In some of my subjects the surfaces (both pial and
white) intruding into the optic chiasm. However, when I check the
aparc.DKTatlas+aseg.mgz it seems that although the surfaces are wrong, the
region is segmented as optic chiasm. Can I ignore this type of surface
inac
