[Freesurfer] GLM fitting for the cortical volume

Dear FS experts, I have managed to run the *glm_fit* on the cortical thickness and area on a group of MS patients. However, i am not sure how to do this on the cortical volume. which file represents the cortical volume in subject's directory? Many thanks, -- *Ali M. Al-Radaideh. PhDHead

Re: [Freesurfer] slips on the 3D surface

Hi Michael I wouldn't worry about those tiny bumps, particularlly as they are typically not in cortical regions cheers Bruce On Fri, 23 Jun 2017, Michael Davies wrote: > > Hello, i have noticed a blip or two on a few of my inflated 3D surfaces and > have not been able to edit them away as yet

[Freesurfer] How to obtain MNI coordinates

Hi All, I am trying to visualise nodes of a brain network reconstructed using FreeSurfer Desikan-Killiany Atlas parcellation scheme (aparc+aseg.mgz) on Brain Net Viewer and Network Based Statistics software. In order to do so, I need to upload a .txt file listing Freesurfer labels coordinates i