Dear FS experts
Please ignore my former email.
the tool I used did not show the whole intensity range.
sorry
Cheers
Jürgen
-
University of Zurich
Dr. Jürgen Hänggi, Ph.D.
Department of Psycholog
Hi,
Is there an easy command to only load positive values of an overlay in
Freeview. I know in tksurfer it's truncphaseflag. Freeview does have the
"truncate" option in the surface pane of the GUI. But, I don't see a
command line flag. I'm hoping there's a way that's not in the help
documentati
Dear FS experts
I have a question wrt the label numbers in FreeSurferColorLUT.txt compared with
those in aparc.a2009s+aseg.mgz.
I noticed that the last ctx (GM) label in FreeSurferColorLUT.txt file is
12175 ctx_rh_S_temporal_transverse
whereas in the aparc.a2009s+aseg.mgz file, the highest in
Hi Anthony
do you have any data that you have run through that version of FS? Or maybe
you can run another dataset through it? It doesn't matter to us what
subject it is
cheers
Bruce
On Fri, 2 Jun 2017, Anthony Dick wrote:
Hello Eugenio,
Thanks for responding. The PING dataset is a pu
Yes, please, send me a list of files. And, if you don’t mind, please send me
aseg.mgz and wmparc.mgz, if they exist - they are segmentations, so you won’t
be violating the agreement ;-)
Another option is sending me bert.
Cheers,
/E
Juan Eugenio Iglesias
ERC Senior Research Fellow
Translational I
Hello Eugenio,
Thanks for responding. The PING dataset is a public use dataset but requires
direct request from PING. If I share it that would violate the data use
agreement: https://pingstudy.ucsd.edu/legal.html. You can get the data but
would need to go through the proper channels with PING,
Dear Anthony,
Can you please send us a sample subject directory (the mri dir is enough, i
don't need the surfaces), so i can play with it and see if there's anything we
can do?
Cheers
E
Sent from my phone, please excuse brevity and typos
From: Anthony Dick
Sent: Thursday, June 1, 16:40
Subject:
Dear Freesurfer experts,
I have used fslregister to register fMRI data to anatomical data.
However, now I would like to register all fMRI runs to the fMRI run that I
have registered to the anatomical data.
Could someone please let me know how to get a register.dat file between
fMRI runs?
Many th
Hi Freesurfer team,
Sorry for reposting. The previous email might have slipped through the cracks.
I was wondering if anyone know how to create subject-level Z score maps of
thickness (against a set of healthy controls) after regressing out various
covariates such as age / education ?
Thank yo
