[Freesurfer] [How to transform the statistical map from the average surfaces into the individual subject's surfaces]

Dear FreeSurfer experts, Recently, I've been developing the way to detect regions with cortical dysplasia from MRI-negative. So, I compared an individual epilepsy patient's MRI with 30 healthy controls' MRI in cortical thickness. In the final step, I would like to confirm whether the fina

Re: [Freesurfer] Installing and enabling cuda

Dear Richard, Thank you for your reply. I tried to compile by looking FAQ about CUDA in Ubuntu Ask, but it is get corrupted and I am forced to uninstall both NVIDIA driver and CUDA. I need help to compile it. Can I get some guidance or manual? Thanks Ramesh On Sun, May 21, 2017 at 2:18 AM, R Ed

Re: [Freesurfer] mac mghread and freeview error {Disarmed}

Cheers, *Dr Kevin Aquino* Research fellow, Sir Peter Mansfield Magnetic Resonance Center, The University of Nottingham. Honorary Research Fellow School of Physics, Faculty of Science, University of Sydney *E* kevin.aqu...@nottingham.ac.uk, aqu...@physics.usyd.edu.au | *W* https://kevinaquino.gi

Re: [Freesurfer] mac mghread and freeview error

Hi, There is some issue with running freeview as an application package on macOS. You can try running it as a command-line from Terminal: /Applications/freesurfer/Freeview.app/Contents/MacOS/Freeview Best, Ruopeng > On May 21, 2017, at 8:36 AM, Fekonja wrote: > > Hi FreeSurfer Developers, >

Re: [Freesurfer] Two group two time longitudinal analysis

Dear Martin， Thank you for your reply. I used a paired analysis to do "two groups two times data of the longitudinal analysis". But unfortunately, I did not make the results, and I use “mri_glmfit-sim” to find 0 vertices in mask. My files are as follows. Fsgd 1: (pairs.fsgd) GroupDescriptorFile

[Freesurfer] Thresholding sig.mgh with cluster extent K > 20 voxels

Hi Everyone, How may I threshold the sig.mgh (p<0.001) with a cluster extent K > 20 voxels? Is it possible to do this in Freesurfer? Thanks. Best Wishes, Elijah Dr. Elijah Mak, Research Associate Department of Psychiatry,  Old Age Psychiatry Group University of Cambridge Trinity College, CB21T

[Freesurfer] mac mghread and freeview error

Hi FreeSurfer Developers, I’ve just installed FreeSurfer on my MacBook Pro and experience several Problems. 1. If I generate a .profile file with the command to source FS as soon as I open the Terminal, nothing happens. If I source FS manually it works (e.g. the extract below). 2. If I open Fr