Hi Doug, thank you for the detailed response. Highly appreciated!
Kindly. I want to register FA map to structural T1 image using the command
mri_spmregister as follow:
mri_spmregister move FA.nii --s subj1 --reg reg dat --o FA_2_T1.nii.gz
Is this correct?
Original Message ---
Glad to hear it worked out
Bruce
> On Feb 24, 2017, at 5:01 PM, Rockers, Elijah D.
> wrote:
>
> OK, sorry for spamming the list. I fixed the the faulty skullstrip by using
>
> recon-all -skullstrip -clean-bm -no-wsgcaatlas -subjid
>
> Currently redoing the surface reconstructions, but it sh
Dear Doug,
I was wondering, why do you prefer mni152reg to mri_coreg for gregistration to
MNI? According to help, mri_coreg is also able to do 12 DOF registration.
Antonin
mri_coreg is the FS implementation of spm_coreg (spmregister) both of which
use normalized mutual info. bbregister uses
mri_coreg is the FS implementation of spm_coreg (spmregister) both of
which use normalized mutual info. bbregister uses the BBR cost function
and is preferred for all MRI. For registration to MNI space, we usually
use mni152reg (a wrapper around fsl's flirt)
On 2/25/17 8:49 AM, John Anderson
Thank you so much Dr. Doug! I just have one more question:
Now I want to compute the same information for our second modality (i.e., mean
and std intensity of different HP_subfields for our additional scan, e,g., T2
or FLAIR).My question is that how could I use .FSspace.mgz (in mri
folder) and T
Dear Vasudev,
on what filesystem does your working directory reside?
According to the path to your data it seems that you use some external drive,
probably with non-unix-like filesystem.
The error most probably means, that your filesystem does not support symbolic
links.
Regards,
Antonin
Dea
Dear Freesurfer experts,
I see that the tool "mri_coreg" has been implemented recently in Free Surfer 6
and I really wanted to know what are the differences between the registration
tools "bbregister", " spmregister" and "mri_coreg"! Kindly:
1. Are these tools similar? if not what are the differe
Dear all ,
I have been incurring lot of problems while running recon-all on ubuntu
16.04 , recon-all throws following error :
" #@# Curv .H and .K lh Sa 25. Feb 04:09:16 CET 2017
/media/vasudev/vkirsch4/Project_BLVP/HCP_Proj/KON2/T1w/KON2/surf
mris_curvature -w lh.white.preaparc
total integra
