[Freesurfer] Cohen's D = gamma.mgh / rstd.mgh?

2016-11-26 Thread Elijah Mak
Hi there, What is the correct way to plot, at each vertex, the Cohen's *D* after a *mri_glmfit* comparison? I've seen a few variations posted on the mailing list. Is gamma.mgh / rstd.mgh is the correct formula? Does rstd.mgh represent pooled SD across both groups (patients and controls)? Secondl

Re: [Freesurfer] Morphing Buckner2011 MNI152 to subject's space {Disarmed}

2016-11-26 Thread Thomas Yeo
Hi Noam, This should be a two step procedure, rather than a one-step procedure. Here's a previous email I sent to the list about warping Choi's striatum atlas to individual subject's striatum (which I have modified for the cerebellum for you). Let us know if this works. 1) Assuming you are quite

[Freesurfer] OPPORTUNITY OF FULL-TIME POSTDOCTORAL FELLOWSHIP AT THE UNIVERSITY OF SÃO PAULO, BRAZIL

2016-11-26 Thread Neuroimagem IPQHCFMUSP - LIM21
One postdoctoral position is available within the Laboratory of Psychiatric Neuroimaging (LIM21) (www.neuroimagem.org.br/) at the University of São Paulo Medical School, Brazil, directed by Geraldo F. Busatto, Ph.D. Candidates should send a message to neuroimagem@hc.fm.usp.br with his/her CV