Hi Z K
The contents of build-stamp.txt are
freesurfer-Darwin-lion-stable-pub-v5.3.0.
Best Wishes
Cong Chen
> Date: Tue, 18 Oct 2016 11:09:20 -0400
> From: Z K
>
>
> Hello,
>
> Can you provide me with the contents of your
> /Applications/freesurfer/build-stamp.txt file?
>
>
>
> On 10
Hi Erik
if you mean what sequences should you acquire, Andre van der Kouwe has a
website with recommendations for different platforms. Typicall we like a
multi-echo MPRAGE and a T2-SPACE FLAIR scan as well if you have time
cheers
Bruce
On Tue,
18 Oct 2016, Erik Lindberg wrote:
Dear Frees
Hi Taha
none that I can think of. The medial wall is pretty substantial region
though - I am more concerned about your subject with only 53 vertices in
it. You can visualize it by loading the ?h.cortex.label onto the inflated
surface. Everything not in the label should be set to 0
cheers
Bru
Bump
On Thu, Sep 29, 2016 at 4:02 PM, Kristafor Farrant wrote:
> Hi there,
>
> As a complete newbie to the Tracula tool, I have a questions about using
> it. Is it possible to train tracula to track additional pathways other than
> the 18 thats are already included? I was to track several pathw
What do you mean by ³combining² sequences?
Peace,
Matt.
From: on behalf of Erik Lindberg
Reply-To: Freesurfer support list
Date: Tuesday, October 18, 2016 at 2:52 PM
To:
Subject: [Freesurfer] Optimal combination of MRI-sequences
Dear Freesufer experts,
We are in the process of starti
I see now, thanks for the answer. If I may, is there any particular reason
why such a disparity between two subjects, is this due to anatomical
variability between individuals? I was surprised by the 9,000 values that
was missing.
On Fri, Oct 14, 2016 at 10:40 AM, Douglas Greve
wrote:
> The enti
The * is what makes the script useful as that allows it to process all
the subjects without you having to specify every subject. That script
only works if you have already set up your subject's folders in the
directory structure freesurfer expects. Is this the case? Or are you
working from dico
Dear Freesufer experts,
We are in the process of starting a large MRI project on normal aging and
dementia.
There has been a lot of discussions about what sequences to use.
We are now thinking about combining several sequences. Is there an optimal
combination of MRI sequences for Freesufer
Hi Brad,
I don't have any experience with your first issue, but with regards to your
second issue: are you running Windows10 as the host OS and Ubuntu as the
guest OS? Ubuntu requires root (or admin) access to install packages. If
you installed Ubuntu yourself, it should have prompted you to cre
Hi Zeke,
Thanks for your reply! The issue has been resolved - it was the temp folder
on the system running out of space. But thank you very much for your
suggestions!
Best,
Qinggang
On Tue, Oct 18, 2016 at 10:07 AM, Z K wrote:
> What version of perl are you using?
>
>$> perl --version
>
>
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI
this does not have the mri_glmfit command, but that is the same doing
the voxel-wise stats with the change in --y. This does not include
correction for ICV
On 10/18/16 10:53 AM, miracle ozzoude wrote:
hello doug,
Thanks for
Hello,
Can you provide me with the contents of your
/Applications/freesurfer/build-stamp.txt file?
On 10/18/2016 10:13 AM, Cong wrote:
> Dear freesufer experts
> I’m learning DTI image process according to steps in FsTutorial/
> Diffusion_DtiIntegration. In Spatial Normalization I need cr
hello doug,
Thanks for the response. Please can you send me the link. Also, does GLM
correct for total intracranial volume or do I need to create fsgd file with
total intracranial volume as covariate? Thanks
On Tue, Oct 18, 2016 at 10:48 AM, Douglas Greve
wrote:
> do you mean volumes of ROIs? Ye
do you mean volumes of ROIs? Yes, there is a tutorial on this in our
wiki, but basically you need to run aparcstats2table and/or
asegstats2table to create a table of volumes for each subject and ROI.
Then use mrI_glmfit with the --table option instead of --y
On 10/18/16 10:18 AM, miracle ozzo
Hello Expert,
Is there are way to perform glm analysis on cortical and subcortical
volumes. Thanks
Best,.
Paul
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The information in thi
What version of perl are you using?
$> perl --version
If its perl 5.20 (or maybe 5.22) than the error you are encountering is
because because that version of perl is incompatible with the MNI tools
shipped with the version of freesurfer you are using.
The easiest way to remedy the situation
Dear freesufer experts I’m learning DTI image process according to steps in FsTutorial/ Diffusion_DtiIntegration. In Spatial Normalization I need create a .m3z morph file through mir_cvs_register. I used command mri_cvs_register --mov subjectname --template cvs_avg35. But it always stop for mri
Oops, I meant to write "Ubuntu 16 comes with a version of perl that is
*incompatible* with the MNI tools..."
On 10/18/2016 10:03 AM, Z K wrote:
> Ubuntu 16 comes with a version of perl that is compatible with the MNI
> tools shipped with the version of freesurfer you are using.
>
> The easiest w
Ubuntu 16 comes with a version of perl that is compatible with the MNI
tools shipped with the version of freesurfer you are using.
The easiest way to remedy the situation is to download and install the
development version of freesurfer which fixes this issue and will be
included in the upcoming
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