Re: [Freesurfer] Multiple Comparison Question for surface-based analyses

2016-10-16 Thread Ajay Kurani
Hi Doug, I had some additional questions regarding multiple comparisons in Freesurfer. 1) Do you correct the left and right hemispheres separately or combine both together for muliple comparison correction? 2) Say you are testing multiple contrasts in your model: A > B, A< B etc. Do you correct

Re: [Freesurfer] FreeSurfer on MP2RAGE

2016-10-16 Thread Daniel Ferreira
Dear experts, I just wanted to come back to my previous question since we have not got any answer: We have been working quite extensively with Freesurfer over the years. We are now starting to collect a new large cohort and we are about to decide which T1-weighted sequence to use, MPRAGE or MP2RA

Re: [Freesurfer] Freesurfer Digest, Vol 152, Issue 22

2016-10-16 Thread Bruce Fischl
553 Could not create file?. Could you give me some advices? Best Wishes Cong Chen -- next part ------ An HTML attachment was scrubbed... URL:http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20161016/9 08ffa28/attachment-0001.html --

Re: [Freesurfer] Freesurfer Digest, Vol 152, Issue 22

2016-10-16 Thread AKUDJEDU, THEOPHILUS
Entering Passive Mode (132,183,202,158,147,237). 553 Could not create file?. Could you give me some advices? Best Wishes Cong Chen -- next part -- An HTML attachment was scrubbed... URL: http://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/attachments/20161016/908ffa28/atta

Re: [Freesurfer] Problem in upload file through ftp

2016-10-16 Thread Bruce Fischl
Hi Cong can you send us your full session history - what exact commands did you type and what was the screen output? cheers Bruce On Sun, 16 Oct 2016, Cong wrote: Dear freesurfer experts    When I use command "put path/to/my/file”, it’s always appear an error "229 Entering Extended Passive M