[Freesurfer] Fwd: Subcortical Segmentation

Hi, I am new to freesurfer. I would like to know the command for subcortical segmentation of brain MRI volume. I read on freesurfer wiki page the recon-all -autorecon2 stage is useful for this. *My question is what exact command should I use for this purpose.* I am familiar with FSL. In FSL 'FIRST

[Freesurfer] Subcortical Segmentation

Hi, I am new to freesurfer. I would like to know the command for subcortical segmentation of brain MRI volume. I read on freesurfer wiki page the recon-all -autorecon2 stage is useful for this. *My question is what exact command should I use for this purpose.* I am familiar with FSL. In FSL 'FIRST

[Freesurfer] qdec long parsing table to look in non-existant directory

Hello everyone, I am running qdec for longitudinal data for the first time and although I have a file that matches the guide on the wiki, the script is looking in a non-exsistant file location (see below). While there is a 1001 file and a 1001_MR1, I am not sure where it is getting the 1001_MR1.lo

[Freesurfer] how to exact the result of the stats filedir

Hello FreeSurfer Developers, I’m attempting to exact the result of ‘stats’filedir, such as file ‘lh.aparc.stats’, I want to know you guys how to do this work. Your kind reply would be appreciated. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.