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Sure:
/usr/local/freesurfer/subjects/bert/mri
/usr/local/freesurfer/bin/mri_nu_correct.mni
--n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o
orig_nu.mgz
nIters 1
$Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $
Linux saeed-CDS-Custom-Configuration 4.4.0-36-gene
Hi Linette,
just noticed that this slipped through.
-qcache from cross cannot be used.
The preproc command is fine, but qcache does more (which you may not
need). With qcache it smoothes at different levels, so that you can
select the smoothing level later. The preproc command below only
s
Can you not just change the number in the text box?
On 09/06/2016 12:49 PM, wanghaibao wrote:
> Hello,*Douglas*
> I used the freesurfer 5.3 in fedora 20,there is a question in my
> reseach,may be not a question!
> When i view the results of analysis in the qdec window,why did i
> cannot change
Hi Chester, can you try using freeview? We are no longer developing tkmedit.
doug
On 09/04/2016 08:51 PM, Chester Kang wrote:
> Hi,
>
> This occurs when executing the tkmedit command in order to perform white
> and grey matter edits.
> Clicking on zoom2 in order to enlarge the brain and then on
I think it is probably an MNI problem. Can you run the following command
and send the terminal output?
mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i
orig.mgz --o orig_nu.mgz
On 09/04/2016 06:13 PM, Saeed mahdizadeh bakhshmand wrote:
> Hello FreeSurfer Developers,
>
Not sure, can you run
mri_convert /media/vasudev/Daten/VBCT/PAT30.nii.gz
/media/vasudev/Daten/VBCT_results/PAT30/mri/orig/001.mgz
and send all the screen output?
On 09/02/2016 12:17 PM, Dev vasu wrote:
>
>
>
> Dear Sir / madam,
>
> I have tried running recon-all with GNU parallel and i am i
Those are not important, just a few divots that did not get smoothed out
during the inflation. The only thing that you need to be concerned about
is the accuracy of the white and pial surfaces when viewed on the MRI
volume. the inflated surface is only for visualization
On 09/03/2016 10:22 AM,
That label (lh_S_front_inf) is the name of a cortical region. The volume
measure is the total volume of gray matter for that region. The
thickness is the mean thickness of that region. No CSF is included.
On 09/02/2016 08:12 PM, tulu wrote:
>
> Dear FS expert
>
> I use the aparcstat2table and
Hello,Douglas
I used the freesurfer 5.3 in fedora 20,there is a question in my reseach,may be
not a question!
When i view the results of analysis in the qdec window,why did i cannot change
the value of the Threshold,such as min(which had been seted with the value of
2) ,in the same way,the max
hello,everyone
I used the freesurfer 5.3 in fedora 20,there is a question in my reseach,may be
not a question!
When i view the results of analysis in the qdec window,why did i cannot change
the value of the Threshold,such as min(which had been seted with the value of
2) ,in the same way,the ma
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