[Freesurfer] FSFAST- Cerebellum

Hi all, I am trying to extract mean time series BOLD data using FSFAST from Cortical ROIs + sub cortical ROIs and cerebellum. preproc-sess -s rest210 -fsd bold -surface fsaverage lhrh -mni305 -fwhm 6 -per-run -stc oddmri_segstats --annot fsaverage lh aparc --i rest210/bold/001/fmcpr.odd.sm6.f

Re: [Freesurfer] registering to fsaverage

Hi Doug So all of my sulci for each subject have been registered to fsaverage using mri_surf2surf. I am now wondering how I could create an average of a sulcus using these overlays - I understand that mris_make_average_surface is an option but I cannot seem to find whether this works for overlays

[Freesurfer] ERROR: mpr2mni305 failed

Hi there I running freesurfer-Darwin-lion-stable-pub-v5.3.0 on a Mac 10.10.5. I have run recon-all successfully in the past, but now I am getting an error of mpr2mni305 failed, see transforms/talairach_avi.log This issue appears the same as a recent post http://www.mail-archive.com/freesurfer%

[Freesurfer] REPOST: controlling for ICV in LME

Dear FreeSurfer experts, I conducted a study with 3 groups of children (2 trainings, 1 control) and I want to analyze them longitudinally with LMEs. While preparing my data 2 topics came up that I would like to know more about. A. controlling for ICV/mean thickness/surface area 1) I want to l

[Freesurfer] Postdoctoral Position in Infant MRI Analysis at UNC-Chapel Hill

Postdoctoral research associate positions are available in the Department of Radiology and Biomedical Research Imaging Center (BRIC) at the University of North Carolina at Chapel Hill (UNC-Chapel Hill). Our current focuses are to better understand the dynamic and critical early brain development in

Re: [Freesurfer] Apply mris_apply_reg for a label

Hello, I am a little but confused with the syntax: I have a drawn label lh.manual.label and I want it on the right hemisphere and I was thinking of this command: mri_label2label --srcsurfreg lh.sphere.reg --targsurfreg rh.sphere.reg --surfreg lh.sphere.left_right --regmethod surface --hemi lh --sr

[Freesurfer] FSFAST time series extraction

 Hi all, I am trying to extract mean time series BOLD data using FSFAST from Cortical ROIs + sub cortical ROIs and cerebellum. preproc-sess -s rest210 -fsd bold -surface fsaverage lhrh -mni305 -fwhm 6 -per-run -stc odd    mri_segstats --annot fsaverage lh aparc --i rest210/bold/001/fmcpr.odd.sm6