Hello All,
I am running an analysis strictly on subcortical volumes, and to save time
and disk space I wanted to avoid if possible construction of surfaces and
seems that it is necessary? I first ran recon-all -autorecon1, second I ran
recon-all -subcortseg and the final error was regarding no su
Hi Bruce,Thank you for the response.
Maryam
On Friday, April 29, 2016 1:54 PM, Bruce Fischl
wrote:
Hi Maryam
I think it would be
foreach hemi (lh rh)
mris_make_surfaces -whiteonly -mgz \
-T1 ${hemi}.brain.finalsurfs $henmi
mris_make_surfaces -nowhite -orig_pial white
Hi Maryam
I think it would be
foreach hemi (lh rh)
mris_make_surfaces -whiteonly -mgz \
-T1 ${hemi}.brain.finalsurfs $henmi
mris_make_surfaces -nowhite -orig_pial white
-T1 ${hemi}.brain.finalsurfs $henmi
if you want, you can also use -output .test and it will add .test to
Dear experts,I am trying to fix the surfaces which are crossing to each other
in the middle where the hemispheres reach each other.As Bruce mentioned before
I am trying to create two volumes (lh.brain.finalsurfs.mgz ,
rh.brain.finalsurfs.mgz ) nad edit them individually.Then I want to rerun th
Hello Freesurfer Experts,
Long story short--I would like to extract BOLD values from each TR across
all vertices for one subjects flattened surface
Following is a brief overview of my steps and at the end you can see where
I am stuck.
First, after *recon-all I* followed the steps to cut the lh inf
hello experts
i solve the problem
always thanks your reply
2016-04-30 0:18 GMT+09:00 A-reum Min :
> hi experts
>
> i have some problem using qdec
>
> when i enter the qdec and then 'Generate Stats Data Tables'
>
> show up these sentences
>
> asegstats2table --common-segs --meas volume --tablefi
Hi Bastien
maybe it would be easier and more accurate to extract the
S_inrapriet_and_P_trans then use sulc to remove any vertices that are < 0
(that is, are not sulcal)?
cheers
Bruce
On Fri, 29 Apr 2016, Bastian Cheng
wrote:
> Dear all,
>
> I am creating a hand-drawn label of the Intraparie
Hi Heidi
can you copy and paste the full command you ran and the screen output and
send it to us? Also, what version are you running?
cheers
Bruce
On Fri, 29 Apr 2016, Heidi Foo wrote:
Dear FreeSurfer Experts,
I am currently trying to run cortical parcellation on my subjects. However,
I a
Dear
FS-Group
I use the lme matlab tools for my
longitudinal analysis and everything works fine.
My dataset consists of 2 time-points
and 2 groups (patients and controls) and my design matrix X contains 4 columns
(1. intercept, 2. time, 3. group, 4. interacti
