thanks, Doug. I am still extremely confused, however. *Am I meant to run
recon-all first? *I was told in a previous email that I should do this
first, however, I thought that Freesurfer takes the volumes and does a
linear registration to MNI305 template, which would not work for my scans
that are l
Hi all,
I have a data set of 14 subjects with intracranial (both cortical and
subcortical) electrode implants, already recon'ed in Freesurfer, with an
average brain + surface computed of these subjects. I would like to map each
subject's electrode coordinates (a set of RAS points) into the aver
rename the file from "/Applications/freesurfer/license.txt" to
"/Applications/freesurfer/.license"
It should be backwards compatible but in this case it appears their is
an issue. The error went away for me when I tested it, but please let me
know if this doesnt work for you.
-Zeke
On 04/07/2
Hello Marita,
Could you please email me your license.txt TO MY PERSONAL EMAIL ADDRESS
so I can investigate what the issue might be? Also, please send me your
/Applications/freesurfer/build-stamp.txt file.
Thanks.
-Zeke
On 04/07/2016 01:23 PM, Marita Partanen wrote:
> Hi there,
>
> I'm trying
Hi there,
I'm trying to install Freesurfer onto our Mac OS X 10.10.5. I was able to
download the program and install it onto the two users on this computer. I am
also able to open bert using freeview, open qdec, and start the recon-all for
bert. However when I try to load bert using or
, I ge
Hi Meng,
here are some reasons for different looking images (and therefore
different structural estimates):
A Acquisition
A1. Head Motion during acquisition:
See e.g.
http://reuter.mit.edu/publications/pid/reuter-motion14
http://reuter.mit.edu/publications/pid/tisdall15
A2. Hydration levels
ht
Hi Laura,
1)
you would need to model the 3 level variable differently, as 1,2,3 will
be understood as continuous and that is not what you want. Instead you
have two columns: one column for group 2, where all instances are binary
(1 if group is 2, else 0), and one for group 3. Then the intercep
Hi everyone,
I am trying to extract regional cortical thickness but confused with the
altered values for the same subject within two days.
In our experiment, participants were scanned with the identical protocol in
three times continuously: including baseline, 2 hours, 24 hours later. All
T1s w
Dear FreeSurfers and LME experts,
I've just started using the LME toolbox by Bernal-Rusiel et al (2012, 2013) in
Matlab, apart from FreeSurfer. My experimental design includes one
between-subjects factor (group with two levels, 24 vs 22 subjects), and two
within-subjects (WS) factors (day with
