[Freesurfer] ExploreDTI Workshop!

2016-02-27 Thread Szabolcs David
Thrilled to announce that we are going to hold an ExploreDTI workshop in Utrecht (July 4-6)! More details can be found here: http://www.exploredti.com/workshop. We hope to see you there! Cheers, Szabolcs ___ Freesurfer mailing list Freesurfer@nmr.mgh.ha

Re: [Freesurfer] cortex mask

2016-02-27 Thread Bruce Fischl
mri_vol2vol on the ribbon.mgz should do the trick. Use bbregister to register the T2 to the surfaces cheers Bruce On Sat, 27 Feb 2016, Ali Radaideh wrote: Dear FreeSurfer Experts, We have two high resolution datasets (T1 and T2* images). T2* is co-registered to the T1 volume. The T1 volume w

[Freesurfer] cortex mask

2016-02-27 Thread Ali Radaideh
Dear FreeSurfer Experts, We have two high resolution datasets (T1 and T2* images). T2* is co-registered to the T1 volume. The T1 volume was processed in freesurfer using the recon-all and we want to use the segmented cortex (by freesurfer) as a mask to extract the cortex from the T2* volume. Woul

[Freesurfer] Very urgent matlab command line to transform vol to label.

2016-02-27 Thread stdp82
Hi list,I have read on your mail list that I could use the command line reported below to covert vol to label.I'm confused on the matlab command line.Specifically, if I using an MRS voxel (in native space or MNI, as preferred) located bilaterally of 3.0x3.0x3.0 mm, which are lindex, lxyz, ovals?

[Freesurfer] Announcing the Copenhagen FreeSurfer Course 2016

2016-02-27 Thread Melanie Ganz
​​We are pleased to announce a European FreeSurfer Course that will be held  from August 10th to 12th, 2016 in Copenhagen, Denmark. The course will be  organized by the Neurobiology Research Unit, Copenhagen University  Hospital in cooperation with the Laboratory for Computational Neuroimaging  of