[Freesurfer] minimum number of vertices for cluster-correction

Hi all, Can someone help me find how to get the minimum number of vertices required to pass the cluster-corrected threshold with monte carlo simulations? -- Thank you, Tara ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mg

[Freesurfer] Question on longitudinal stats directory

Hi there, I have run my subjects from multiple time points through a cross-sectional stream and a longitudinal stream. When I look at the 'stats' directory for the same subject from the cross-sectional pipeline and the longitudinal pipeline, I see that the numbers are different. For example

[Freesurfer] Freesurfer 6.0 -hires mri_segment potential issue

Hello Freesurfer experts, I am using the nightly build of Freesurfer 6.0 (Dec 18, 2015) on Ubuntu 14.04 with a high resolution image (0.5mm isotropic). I set OMP_NUM_THREADS=16 and then passed the -openmp 16 and -itkthreads 16 flags in my autorecon 2 line command. Autorecon1 and the beginning

[Freesurfer] mri_surfcluster on group

Hi list,I'd like to perform mri_surfcluster on a group to eliminate cluster < 5 voxels from sig.nii.gz after FDR correction.I'm running mri_surfcluster --in sig.nii.gz --hemi rh --sign abs --fdr 0.05 --minarea 5 --sum summaryfile --ocn ocnid but --subject ... must be included. How should do I d

[Freesurfer] .w file for freeview

Hi Freesurfers, I tried to overlay .w file onto a surface, and failed. I dug the previous posts and know this file format is obsolete now. However I wish to know in which version of freeview can I still use this file format, if possible. It will be great if you can provide the link for it. If t