Hi.
Just one another related question: now that I was able to combine left and
right hippocampal subfields with the aparc-aseg correctly, I noticed that
the left and right hippocampal subfields have the same color labels and
codes. What would be the best way to make sure that FreeSurfer understand
That was the issue. Thank you!
Best,
Jonathan Plasencia
Graduate Student
NSF Graduate Research Fellow
*School of Biological and Health Systems Engineering*
*Arizona State University*
Email: jplas...@asu.edu
Phone: (480)861-7017
On Fri, Oct 23, 2015 at 8:17 AM, wrote:
>
> My guess is that you a
Hi Kasper
yes, I think that is correct
Bruce
On Sat, 24 Oct 2015, Kasper Jessen wrote:
Dear freesurfer group
I have edited my subjects with both control points and brainmask edits. For
the re-processing both my CPs and brainmask edits, at the same time i used
the following command:
*
r
Dear freesurfer group
I have edited my subjects with both control points and brainmask edits. For
the re-processing both my CPs and brainmask edits, at the same time i used
the following command:
-
recon-all -base Subject_base -tp Tp1 -tp Tp2 -autorecon2 -autorecon3 -3T
Is this a correc
Dear FS experts,
I want to inquire if there is any tool or method in Freesurfer that can help to calculate the head circumference from MPRAGE ?
Thanks for any advice!
Bests,
John
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Hi Simon
I just took a look at the code and I believe that we make it 0 median
(not mean) and unit standard deviation. The curvatures can get quite large
in regions where the vertex spacing is small and the median is robust to
this.
cheers
Bruce
On Sat, 24 Oct 2015, Simon Vandekar wrote:
>
Hi Bruce,
I think that unnormalized sulcal depth would be useful. However, I am also
curious what the units are in the standard output, because they appear to not
be z-score standardized in each hemisphere.
Thanks again,
Simon
>H I Simon
>Do you need the unnormalized sulc? It would be pretty
