[Freesurfer] problem fast_selxavg3b

2015-10-04 Thread Desiree Thielemann
Dear freesurfer experts, I included the new function fast_selxavg3b but I got another problem: First error: /opt/freesurfer/bin/mris_fwhm --mask /mnt/bp13dat/Studie43_Phantom_Arm/Statistik/4_MRT/fsfast/Thielemann/PT_2prae_VP01_2_f/bold/firstlevel.sm06.stc.lh/mask.nii.gz --i /mnt/bp13dat/Stud

[Freesurfer] Custom parcellation for HCP data

2015-10-04 Thread Simon Baker
Hi all, We want to create a custom parcellation for use with the connectome project data. However, we have not been able to achieve accurate spatial alignment between the random parcellation volume and the T1w volume. Specifically, there appears to be an "offset," possibly due to a mismatch betwee

Re: [Freesurfer] Error using selexavg3-sess

2015-10-04 Thread dgw
Hi Keji, Without more details, it may be hard to guess. I suspect it might be that not all of the conditions in your analysis happened during the experiment for those participants (e.g. some sort of button press). hth d On 10/2/15 5:47 PM, Morenikeji Adebayo wrote: > Just following up on this