Thank you
Martin
> On 28 Sep 2015, at 01:08, Bruce Fischl wrote:
>
> Hi Martin
>
> you will need to get the transform into either .lta .xfm or .dat format,
> after which you can use mris_transform or mri_surf2surf I believe.
>
> LTA format is specified here:
> http://surfer.nmr.mgh.harvard.ed
I have already performed recon-all but would like to derive a surface model of
a particular segmented brain structure.
I have a wmparc volume file and would like to use a command to get a surface of
a structure by its label.
Slightly differently would also like to know the best way of producin
Hi Martin
what do you mean by "convert"? What is the volume? If it's a T1-weighted
MRI then you can use recon-all, but it's not so much a conversion as a
reconstruction.
cheers
Bruce
On Sun, 27 Sep 2015, Martin Tisdall wrote:
> Could you talk me through the best way to convert a volume to a su
Hi Martin
you will need to get the transform into either .lta .xfm or .dat format,
after which you can use mris_transform or mri_surf2surf I believe.
LTA format is specified here:
http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/LtaFormat
cheers
Bruce
On Sun,
27 Sep 2015, Martin Tisdall wr
Hi Martin,
Is there are holes in the intersected label, is there a recommended
method for identifying which subjects caused the holes?
I am hoping to run my two-stage model using an fsgd file and contrast
vectors in the same way I have completed cross-sectional analyses
previously. Will the
Could you talk me through the best way to convert a volume to a surface
together with the option flags.
Have tried mri_tessellate and mri_mc but not getting great results.
Thanks
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I am trying to apply a transformation to the freesurfer Pial surface files to
move them to correct RAS space to be registered with original t1 volume when
opened in slicer.
Have seen a few threads about the fact that this is caused by different
coordinate systems but not sure how to fix it.
I
