Re: [Freesurfer] FreeSurfer 6.0 dev version Output

2015-09-13 Thread Priyanka Mehta
Hi again I want to use my hippocampal segmentation for masking 2380 brain volumes. Is there a way to find out using Freesurfer if the hippocampal subfields and the 2380 volumes are in the same space? The mean of the 2380 volumes and the hippocampal subfields align correctly when I use Freesurfer's

[Freesurfer] Questions about the correction methods in Surfstat

2015-09-13 Thread chenhf_uestc
Dear Surfstat Users, I have a question about the RFT correction method in the Surfstat(http://www.math.mcgill.ca/keith/surfstat/). In the online manual, the command to perform RFT correction is as follows: [ pval, peak, clus ] = SurfStatP( slm, mask ); pval.P contains P-values for peaks, and p

Re: [Freesurfer] White matter volume

2015-09-13 Thread Bruce Fischl
Hi John I'm actually not sure how fslstats works. I'll cc MJ so he can answer that part of it. When we measure volume (e.g. in the stats files) we do partial volume correction as opposed to counting voxels, which we have found to be more accurate and repeatable. cheers Bruce On Sat, 12 Sep