Re: [Freesurfer] question on Cortical Parcellation Estimated by Intrinsic Functional Connectivity

2015-08-22 Thread Thomas Yeo
Hi Hong Xin, Yes. fslview will complain. After you install freesurfer. You can use freeview to display my parcellation and the fsl template. You should verify that they align perfectly well. So my parcellation and FSL mni template are in alignment, but the header information are not the same. Sin

Re: [Freesurfer] Number of vertex from pial surface to inflated surface

2015-08-22 Thread james pardon
Thanks Bruce. Very helpful. On Sat, Aug 22, 2015 at 8:44 PM, Bruce Fischl wrote: > Hi James > > the same vertex index can be used within-subject and within-hemisphere (so > e.g. lh.pial, lh.white and lh.inflated all can be indexed with the same #s) > > cheers > Bruce > > On Sat, 22 Aug 2015, jam

Re: [Freesurfer] Number of vertex from pial surface to inflated surface

2015-08-22 Thread Bruce Fischl
Hi James the same vertex index can be used within-subject and within-hemisphere (so e.g. lh.pial, lh.white and lh.inflated all can be indexed with the same #s) cheers Bruce On Sat, 22 Aug 2015, james pardon wrote: > Dear All, > > I would be grateful if someone could help me to find the correp

[Freesurfer] Number of vertex from pial surface to inflated surface

2015-08-22 Thread james pardon
Dear All, I would be grateful if someone could help me to find the correponding vertex number on inflated and pial surfaces. Thanks, James ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/frees

[Freesurfer] slice timing correction fmcstc files are lacking

2015-08-22 Thread stdp82
Hi list, I'm performing slice time correction on preproc-sess -s Sess201 -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd rest -per-run.I have acquired data using a Philipps scanner (interleaved). Thefore, shuold I use "-sliceorder siemens"?The command line:preproc-sess -s Sess201 -fwhm 5 -surfa

[Freesurfer] Calculating PBVC(percentage brain volume change) Question

2015-08-22 Thread pınar karadayı
I am a master student at Turkey, at Istanbul Fatih University.I am writing my master thesis about Alzheimer's disease. My thesis subject is "early MRI-based Alzheimer's conversion to prediction in MCI subjects". For my article I decided to useADNI Database -> UCSF - Longitudinal FreeSur