[Freesurfer] Calculating Skew for VOIs

2015-04-09 Thread Shashwath Meda
Dear All - I am trying to estimate the skew and kurtosis of a VOI. Does anyone know of quick way to do this (maybe using a utility similar to FSUtils)? Any input would be greatly appreciated. Best Shashwath ___ Freesurfer mailing list Freesurfer@nmr.mgh

Re: [Freesurfer] segementation thalamus / thalamus proper

2015-04-09 Thread Bruce Fischl
Hi Charles yes, use the "thalamus-proper = ID 10" as the label. cheers Bruce On Thu, 9 Apr 2015, charles laidi wrote: Dear FreeSurfers, I just would like to ask a quick question about the segmentation of the thalamus / thalamus proper in Freesurfer :  In the lookup table, there are two type

[Freesurfer] segementation thalamus / thalamus proper

2015-04-09 Thread charles laidi
Dear FreeSurfers, I just would like to ask a quick question about the segmentation of the thalamus / thalamus proper in Freesurfer : In the lookup table, there are two types of labels : - Thalamus left = ID 9 - Thalamus-proper = ID 10 When using the asegstats2table function, I don't get anything f

Re: [Freesurfer] Content of register.dof6.dat.param

2015-04-09 Thread Bruce Fischl
Hi pfannmoe Doug is on vacation and not back til next week - you might try reposting then. cheers Bruce On Thu, 9 Apr 2015, pfannmo...@uni-greifswald.de wrote: > Sorry, I ment the first six numbers in "register.dof6.dat.param". > > > > On Thu, 9 Apr 2015 12:33:49 +0200 > pfannmo...@uni-greifs

Re: [Freesurfer] Content of register.dof6.dat.param

2015-04-09 Thread pfannmoelj
Sorry, I ment the first six numbers in "register.dof6.dat.param". On Thu, 9 Apr 2015 12:33:49 +0200 pfannmo...@uni-greifswald.de wrote: > Dear Experts, > > is there a possibility to extract the "motion parameter" from a BBR > registration? Possibly the first three numbers of the > > regist

[Freesurfer] Content of register.dof6.dat.param

2015-04-09 Thread pfannmoelj
Dear Experts, is there a possibility to extract the "motion parameter" from a BBR registration? Possibly the first three numbers of the register.dof6.dat.param file are the same parameter as found in column 2 - 7 in: fmcpr.mcdat. If I have a series of "register.dof6.dat.param" can I use "mc