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Thank you so much! That solved my issue!
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
Sent: Thursday, March 12, 2015 8:42 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Help wi
From: Jon Alan Wieser
Sent: Monday, January 5, 2015 11:13 AM
To: jorge luis; Freesurfer support list
Subject: Re: [Freesurfer] longitudinal statistics LGI
HI Jorge,
how do you determine the number of rows(L) in the contrast matrix?
so if we want to test the ef
From: Jon Alan Wieser
Sent: Tuesday, December 30, 2014 8:11 PM
To: jorge luis
Cc: Kristin Elizabeth Maple
Subject: Re: [Freesurfer] longitudinal statistics LGI
Hi Jorge,
Following your instructions, so far we have done the following:
1-Read your label
lhcortex
Dear Doug,
Thanks for getting back and for your patience.
I see.
mri_label2label does something much fancier and more precise than simply using
a linear transformation to get from one to the other.
It definitely works as the transformed vectors of a label from several subjects
plot right on top
When you run mri_glmfit, add --mask
$SUBJECTS_DIR/fsaverage/mri.2mm/subcort.mask.mgz
doug
On 03/13/2015 11:17 AM, Wolthusen, Rick Peter Fritz wrote:
> Ok! Can I still use these masks as long as I know what areas are
> interpretable? If so, what does it mean in terms of my original question
>
Hi,
In freeview, when I load a volume the voxels are not square to the
viewing windows. Is there an option to view the data with the voxels
square to the viewing windows?
Thanks,
Dan
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Ok! Can I still use these masks as long as I know what areas are interpretable?
If so, what does it mean in terms of my original question (limiting the MCS to
subcortical structures)?
From: freesurfer-boun...@nmr.mgh.harvard.edu
[freesurfer-boun...@nmr.
On 3/13/15 10:10 AM, Krieger, Donald N. wrote:
> Dear List,
>
> Sorry to be unclear in my questions. I had a fundamental misunderstanding
> which I hope to rectify.
>
> (1) It appears that what is called the "freesurfer" coordinate system
> (tkregister) is represented by subject fsaverage. 3D
It does not discredit your results. This is not unexpected behavior. As
you change cluster forming thresholds, the clusters will change sizes,
but the null distribution will also change in complicated ways. The end
result is that it is not easy to predict the effect on the number and
sig of yo
Dear List,
Sorry to be unclear in my questions. I had a fundamental misunderstanding
which I hope to rectify.
(1) It appears that what is called the "freesurfer" coordinate system
(tkregister) is represented by subject fsaverage. 3D coordinate vectors in
label files generated for any subject
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