Hi,
I am new to freesurfer and I am trying to figure our how to extract 3d
masks in native space for the visual cortex (BA 17,18,19) of individual
subjects. I have looked at other threads similar to this, but there are
still a few things I can't figure out in generating the masks (the
conversi
Thank you for the response (again), Bruce!
If I type "recon-all" (only) right after the source command without
setenv SUBJECTS_DIR, it gives me "USAGE: recon-all" with info of the
whole recon-all process. I attached the whole message in the text file,
recon-all without setenv SUBJECTS_DIR.
I
then you type recon-all on the next line and it gives you all the command
not found errors?
On Sun, 7 Sep 2014, Lei, Chia-Ming wrote:
> Thank you again for the reply, Bruce!
>
> After I typed:
> which mri_convert
>
> It came up with:
> Desktop/freesurfer/bin/mri_convert
>
> Let me know if any oth
Dear Freesurfer experts,
I am currently trying to segment a 7T image at 0.8 isotropic
resolution. I have an MPRAGE scan and a Gradient echo, and want to
coregister the data before processing to correct for inhomogenities,
but unsure whether I can use FSL instead of SPM. I am following these
Dear Freesurfer experts,
I am currently trying to segment a 7T image at 0.8 isotropic
resolution. I have an MPRAGE scan and a Gradient echo, and want to
coregister the data before processing to correct for inhomogenities,
but unsure whether I can use FSL instead of SPM. I am following these
Thank you again for the reply, Bruce!
After I typed:
which mri_convert
It came up with:
Desktop/freesurfer/bin/mri_convert
Let me know if any other info you need please. Thank you!
PS. I changed the subject of this email from the Digest to my original
question-related one. Really sorry, but I'
