[Freesurfer] mri_glmfit-sim for volume data: GRF vs. simulation

2014-01-26 Thread Susan Ruiz
Hi FreeSurfers, I was just reading this post to the archive (below) regarding using mri_glmfit-sim on volume data, and it suggests that using --grf rather than doing the simulation can be "inaccurate at low smoothness and low thresholds." At what smoothness values and threshold values should we op

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-26 Thread Sebastian Moeller
Hi Dusan, On Jan 26, 2014, at 15:36 , Douglas Greve wrote: > > Hi Dusan, find out where matlab is and add it to your path. Eg, on my mac > matlab is here > > /Applications/MATLAB_R2011b.app/bin/matlab > > In my .cshrc file, I have > set path = ($path /Applications/MATLAB_R2011b.app/bin/matl

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-26 Thread Douglas Greve
Hi Dusan, find out where matlab is and add it to your path. Eg, on my mac matlab is here /Applications/MATLAB_R2011b.app/bin/matlab In my .cshrc file, I have set path = ($path /Applications/MATLAB_R2011b.app/bin/matlab) doug On 1/26/14 9:28 AM, Dusan Hirjak wrote: Hi Sebastian, I typed

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-26 Thread Dusan Hirjak
Hi Sebastian, I typed "matlab" and "getmatlab" in my terminal, but it did not work. When I typed getmatlab in my terminal I got the following message: "ERROR: Cannot find matlab. Does not exist or is not in path." Typing "matlab" is not working either:-( "command not found" is the answer. I gues

Re: [Freesurfer] Freesurfer, Matlab and Maverick

2014-01-26 Thread Sebastian Moeller
Hi Dusan, (I saw your PN earlier but had no idea and hence did not reply). But this has more information, so I try again ;) On Jan 25, 2014, at 02:00 , Dusan Hirjak wrote: > Dear Freesurferexperts, > > I still have the Problem because I can not run the the mris-command to > estimate the gyri