Dear all,
I am trying to create a annotation file from a ROI_file with multiple ROIs
with values form 1:10 using mris_sample_parc
I had verified that myROIfile and subject001/surf/rh.white and also
mri/T1.mgz loadable together in freeview (=same space).
when running the command
mris_sample_parc
Hi Anastasia,
I've got this error when running -prep Tracula step.
/usr/local/freesurfer/bin/dmri_motion: error while loading shared
libraries: libnetcdf.so.6: cannot open shared object file: No such file or
directory
We have RedHat 6 (I tried in 2 different machines). Do you think it is some
mi
Sorry, I can't tell what happened without looking at the log file. Could
you send it along?
On Wed, 11 Dec 2013, David Soto wrote:
hi Anastasia, I tried then to recontruct the remaining tracts of this
participant for which I could not do the right ILF due to diffusion loss
I set the pathli
Thanks for the response Doug.
-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
Sent: Wednesday, December 11, 2013 10:44 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] paired analys
hi Anastasia, I tried then to recontruct the remaining tracts
of this participant for which I could not do the right ILF due to
diffusion loss
I set the pathlist like this: set pathlist = ( lh.cst_AS rh.cst_AS \
lh.unc_AS rh.unc_AS \
fmajor_PP fminor_PP \
The simple GLM should be the same. When you convert to nifti, you can
either leave it as a surface overlay or you can run mri_surf2vol to
create an actual volume of thicknesses. The latter may change the values
and so change the results. Cluster-based correction for multiple
comparisons will b
Hi Matthieu - In 5.1 the number of control points (ncpts) was only one
number, the same for all 18 tracts. Not sure if this is what's causing the
error.
a.y
On Wed, 11 Dec 2013, Matthieu Vanhoutte wrote:
Hi Anastasia,
I have taken this original file in "FSDIR5.1/bin/dmrirc.example" and mod
Hi Anastasia,
I have taken this original file in "*FSDIR5.1/bin/dmrirc.example"* and
modify into "dmrirc.tutorial", so this is meant for use with the version of
tracula that's in 5.1 ?
I will switch to the last version, but before this I'd like to succeed
launching tracula on 5.1...
Best,
Matth
Hi Matthieu - This sample dmrirc file is meant for use with the version of
tracula that's in 5.3, not 5.1. I would strongly recommend switching to
that version of tracula anyway, due to improvements in performance and
speed.
a.y
On Wed, 11 Dec 2013, Matthieu Vanhoutte wrote:
Hello experts
Hello experts,
I am running the first pre-processing
step in Tracula on FS 5.1 and come across the error:
*set: Variable name must begin with a
letter*
I have attached my dmrirc file. Did I make a mistake in this file?
Best regards,
Matthieu
dmrirc.tutorial
Description: Binary data
Dear Freesurfers,
I have a question regarding how Freesurfer's paired glmfit and
monte-carlo analysis compares with SPM8 GLM design analysis on cortical
thickness. If I were to export thickness maps as nifti files and do a paired
comparison on SPM8, would that be a fair comparison wit
Dear Bruce and FS experts,I am running recon-all using the longitudinal stream.
I have a question regarding the specific command line for recon-all using the
-openmp flag and regarding the organizing directory of longitudinal data.
I am using FS version 5.3 CentOS 6 and in a linux work station wi
Hi,
for running freesurfer in a cloud environment I want to build
*.deb-Packages for freesurfer as installation of packages via puppet is
much easier than copying plain file structures.
As my machines are different in their use and I would like to have it
modular, I think about dividing the freesu
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