[Freesurfer] freesurfer-Virtualbox-linux-x86-stable-pub-v5.3-full.vdi.gz doesnot have mri_strip_skull codes

2013-10-27 Thread Rujing Zha
Dear FreeSurfer Users, I downloaded FreeSurfer latest version in this website:ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Virtualbox-linux-x86-stable-pub-v5.3-full.vdi.gz. I want to strip 3d structure skull by mri_strp_skull,but this package does not have this codes.Why?

Re: [Freesurfer] Power of MRI machine

2013-10-27 Thread Douglas Greve
The field strength is in the dicom header. If you have a dicom file, just run mri_probedicom --i dicomfile This will print out a lot of info including the field strength doug On 10/27/13 9:57 PM, Muhammad Naveed Iqbal Qureshi wrote: Dear Community, Is it possible to detect the scanning power

[Freesurfer] Power of MRI machine

2013-10-27 Thread Muhammad Naveed Iqbal Qureshi
Dear Community, Is it possible to detect the scanning power (either 1.5 or 3 tesla) of MRI acquisition machine from the dicom images, if we do not know about the scanner properties? Best Regards, Muhammad Naveed Iqbal Qureshi

[Freesurfer] Fwd: missing eTIV in asegstats2table

2013-10-27 Thread Daniel Ferreira
Hi Douglas, You are right, sorry for not including the thread. Below I paste our previous conversation. I also attach again the files you asked me for. Thanks, best Daniel Message: 13 Date: Wed, 23 Oct 2013 10:49:44 -0400 From: Douglas Greve Subject: Re: [Freesurfer] missing eTIV in asegstats2

Re: [Freesurfer] Incorrect orientations from MRI convert

2013-10-27 Thread Chiu, Bryan (PHTH)
Hi Douglas, I've looked at the original images in freeview and they follow the correct talairach coordinates. I've run mri_convert again and the files follow the correct talairach coordinates. It appears this may have been a 'one-off' issue. Will update after I autorecon everything. - Bryan