Dear Koen,
It worked...
Thanks a lot
From: Koen Van Leemput
To: Anupa AV
Cc: Freesurfer Mailinglist ; Bruce Fischl
Sent: Thursday, September 19, 2013 12:48 PM
Subject: Re: [Freesurfer] recon-all-hippo-subfeilds
Hi,
I believe "recon-all -s NC -hippo-s
Hi Louis,
I've got the idea about the wm edits, but I have a related question. From
what I see, that's a coronal cut at the level of the amygdala & basal
ganglia. Isn't that the "gray area"? How relevant is to make edits in that
area?
Thanks!
Mihaela
On Thu, Sep 19, 2013 at 4:07 PM, Louis Nicho
Hi FreeSurfer Experts,
I am trying to run a group analysis with a custom fsaverage for which I do
not have a cortex.label file. It seems that in version 5.1, --cortex is
called by default. I did not find a flag to turn this off in the
documentation or the help.
Is there a way to run mri_glmfit with
Dear Freesurfer experts,
I would like to study the relationship between cortical thickness and one
clinical variable with qdec, but correcting for age and gender.
Given that I have only one group and 2 covariates (one continuous, one
dichotomic) I don't know how I should set the design of my anal
Hi Freesurfer Experts,
mkanalysis-sess seems to default to a FWHM of 20 for the smooting of the
ACF (in version 5.1). I was wondering whether it makes sense to use the
same FWHM for volume and surface based analyses of functional data in
FSFAST? I seem to remember that the autocorrelations differ b
I created the label with tkmedit using an MPRage of the patient (1mm isovoxel).
Gesendet: Montag, 16. September 2013 um 17:11 Uhr
Von: "Douglas Greve"
An: freesurfer@nmr.mgh.harvard.edu
Betreff: Re: [Freesurfer] Mappin lesions labels to Talairach space
The problem is probably that each label
Hi,
I believe "recon-all -s NC -hippo-subfields" should do that.
Please let us know if it doesn't.
Koen
On Sep 19, 2013 9:00 AM, "Anupa AV" wrote:
> Dear FS experts,
>
> I've a query regarding the recon-all analysis.
>
> I ran recon-all using the following command
> eg.
> recon-all -i locatio
