Hi Josh
what version? We can probably post a copy of it
cheers
Bruce
On Fri, 14 Dec 2012, Joshua
Lee wrote:
do I need to download the whole freesurfer package again to get it?
-
Josh
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do I need to download the whole freesurfer package again to get it?
-
Josh
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The information in this e-mail is intended only for the p
On 12/14/2012 04:51 PM, Tudor Popescu wrote:
> Thanks Doug! I tried figuring out how to create symlinks manually (as
> I think recon-all has already been run in the case of the group
> analysis tutorial, therefore they were not generated automatically)
> but could not find anything helpful on t
it doesn't, although the 5.2 mri_normalize should help as well
cheers
Bruce
On Fri, 14
Dec 2012, Jonathan Holt wrote:
OK this is great. Does this require the latest version of Freesurfer? I see
recon-all v 5.2, we're running Freesurfer 5.0.0 for reference
On Dec 14, 2012, at 1:16 PM, Alex Han
OK this is great. Does this require the latest version of Freesurfer? I see
recon-all v 5.2, we're running Freesurfer 5.0.0 for reference
On Dec 14, 2012, at 1:16 PM, Alex Hanganu wrote:
> I think Emily is talking about this one:
>
> ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/allp
Hi Tudor, you can create a symbolic link to fsaverage rather than
copying it.
doug
On 12/14/2012 04:18 PM, Tudor Popescu wrote:
> Hello everyone,
>
> I'm following the group analysis tutorial, but have difficulty getting
> all files in the right folders. I have my tutorial data set in
> //med
Hello everyone,
I'm following the group analysis tutorial, but have difficulty getting all
files in the right folders. I have my tutorial data set in *
/media/Dell/_FS/buckner_data/* (a folder that is shared in my VirtualBox),
and my original subjects folder in the default path of *
/home/virtualu
Hi,
this link:
http://surfer.nmr.mgh.harvard.edu/fswiki/TalFailV5.1
discusses a solution to bad talairach.xfm transforms, the -use-mritotal
flag.
this link:
http://surfer.nmr.mgh.harvard.edu/fswiki/eTIV
mentions that the talairach.xfm is used to calculate the total intracranial
volume.
is using
Hi Anastasia,
Just follow up on this thread..
If 5000 samples were used for each voxel, how can I normalize the
intensity of path.pd volumes to a sum of 1 ?
Also what thresholding value was chosen to calculate the tract volume,
shown in the pathstats.overall.txt ?
Thanks.
ping
On Fri, Nov 9, 2
Thanks Douglas !
OK !!
Alex.
Le 14/12/2012 2:27 PM, Douglas N Greve a écrit :
> Hi Alex, you can't do that with tksurfer. You will have to run
> mri_surfcluster to create a new overlay with clusters smaller than 50
> removed.
> doug
> ps. Please send emails to the FS list and not directly to
Hi Alex, you can't do that with tksurfer. You will have to run
mri_surfcluster to create a new overlay with clusters smaller than 50
removed.
doug
ps. Please send emails to the FS list and not directly to me. thanks!
On 12/14/2012 02:17 PM, Alex Hanganu wrote:
> Dear Douglas,
>
> I am using tks
I think Emily is talking about this one:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/misc/allplatforms/
a.
Le 14/12/2012 12:59 PM, Jonathan Holt a écrit :
Emily,
This is good news, can I find or download this revised version somewhere?
jon
On Dec 14, 2012, at 11:37 AM, Emily Rogals
Emily,
This is good news, can I find or download this revised version somewhere?
jon
On Dec 14, 2012, at 11:37 AM, Emily Rogalski wrote:
> We ran into this issue frequently and found that it was resolved by using the
> revised recon -all script that alters the stage where control points are
>
that command is correct. you might try adjusting the threshold
doug
On 12/14/2012 12:04 PM, Alex Hanganu wrote:
> Dear FreeSurfer List,
>
> How can I visualise the beta maps ?
>
> previously there is a mail about this:
> http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg02048.html
>
Dear FreeSurfer List,
How can I visualise the beta maps ?
previously there is a mail about this:
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg02048.html
The "/average7/" subject is missing in FreeSurfer 5.1, so I guess using
"/fsaverage/" is the same, but that command shows
We ran into this issue frequently and found that it was resolved by using
the revised recon -all script that alters the stage where control points
are considered.
Emily
On Wed, Dec 12, 2012 at 10:42 AM, Jonathan Holt wrote:
> OK will do... I'll upload both versions, before and after recon-all
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