[Freesurfer] Coordinate transformation between raw space and freesurfer confirm space

2012-09-08 Thread liang wang
Hi, I need to convert a vast amount of coordinates (voxel unit: i, j, k) in raw space to freesurfer space (256*256*256 FOV). Could someone give some suggestions how to solve it? Thanks, Liang ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu h

Re: [Freesurfer] Freesurfer on Mac Os X 10.8

2012-09-08 Thread Pedro Paulo de Magalhães Oliveira Junior
Yes it works. But for the X11 stuff you need to download X11 (ML doesn't include X11 anymore) http://support.apple.com/kb/HT5293?viewlocale=en_US&locale=en_US - Pedro Paulo de Magalhães Oliveira Junior Netfilter & SpeedComm Telec

[Freesurfer] Freesurfer on Mac Os X 10.8

2012-09-08 Thread Melissa Lancaster
Hi, Is Freesurfer able to run on Mountain Lion? Thanks!!! ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it

Re: [Freesurfer] RB*2008-03-26.gca vs. RB*2011-10-25.gca files

2012-09-08 Thread Bruce Fischl
Hi Wil, we don't rebuild these with every release - only when we think there is a significant reason to do so (e.g. an increase in accuracy or new labels, etc...) cheers Bruce On Sat, 8 Sep 2012, Irwin, William wrote: Hello-   The ?RB_all_2008-03-26.gca? and ?RB_all_withskull_2008-03

Re: [Freesurfer] Differences between BrainSuite and FreeSurfer

2012-09-08 Thread Bruce Fischl
Hi James sure, we'll take a look. Can you clarify what you are doing though? When you say there is decreased thickness what is it relative to? Information on uploading is here: https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange cheers Bruce On Sat, 8 Sep 2012, Patterson, James wrote:

[Freesurfer] RB*2008-03-26.gca vs. RB*2011-10-25.gca files

2012-09-08 Thread Irwin, William
Hello- The 'RB_all_2008-03-26.gca' and 'RB_all_withskull_2008-03-26.gca' files are packaged with the 5.1 release. Is there any reason the 2011 versions ('RB_all_2011-10-25.gca' & 'RB_all_withskull_2011-10-25.gca ')are not included in the 5.1 release or users should not update to these newer v

[Freesurfer] Differences between BrainSuite and FreeSurfer

2012-09-08 Thread Patterson, James
Hello, I'm trying to figure out why I am getting differences in apparent cortical thickness between BrainSuite11a and Freesurfer. I have a patient scan - high res SPGR BRAVO off a GE 1.5T scanner. In BrainSuite, their are marked decreases in cortical thickness that is consistent with the patie