Re: [Freesurfer] pars triangular and BA44 segmentation bug?

2012-06-23 Thread Bruce Fischl
the structures don't need a threshold. Do you know that pars triangularis is left lateralized? For the BAs will get you a solution On Sat, 23 Jun 2012, Gabor Perlaki wrote: > Dear Bruce, > > We don't used any thresholding by ourselves, we just took BA44 volumes out > of the text-file in the sta

Re: [Freesurfer] Question Regarding Contents of FreeSurfer

2012-06-23 Thread Bruce Fischl
no, sorry On Sat, 23 Jun 2012, Alexander Thomas wrote: > Dear FreeSurfer, > > I am looking for a database of brain areas and their associated functions. > Is it the content of the FreeSurfer software? For example, if I point to a > certain brain area (e.g. Broca's area), will FreeSurfer tell me i

Re: [Freesurfer] pars triangular and BA44 segmentation bug?

2012-06-23 Thread Gabor Perlaki
Dear Bruce, We don't used any thresholding by ourselves, we just took BA44 volumes out of the text-file in the stats directory. Should we use thresholded values instead of the volumes reported by the text files in the stats directory? Could we use the volumes reported by the aparc.stats and aseg.s

[Freesurfer] Question Regarding Contents of FreeSurfer

2012-06-23 Thread Alexander Thomas
Dear FreeSurfer, I am looking for a database of brain areas and their associated functions. Is it the content of the FreeSurfer software? For example, if I point to a certain brain area (e.g. Broca's area), will FreeSurfer tell me its associated function (e.g. speech production)? Thank you _

Re: [Freesurfer] pars triangular and BA44 segmentation bug?

2012-06-23 Thread Bruce Fischl
Hi Gabor are you thresholding the BA4 label? In 5.2 we will distribute some tools to automatically threshold the labels so that the predicted area has the average area of the input labels. The right BA44 had more spatial spread than the left, so you might be including a lot of low probability

Re: [Freesurfer] pars triangular and BA44 segmentation bug?

2012-06-23 Thread Gabor Perlaki
Dear Bruce, In the paper "Left-right asymmetry in volume and number of neurons in adult Broca's area." by Katrin Amunts, 10 subjects (5 men and 5 women) were studied, and the volume of BA44 was greater in the left hemisphere than in the right in all ten cases. So, it is very strange that the volum