Re: [Freesurfer] improving automated cerebellar parcellation

2012-04-22 Thread Anthony Dick
Hi Bruce, Can you point me somewhere in the right direction? Is there some example I could start with? I don't use Matlab, although it seems similar to R so I should be okay with learning the syntax, but I just need a place to start. Anthony On 4/20/12 4:02 PM, Bruce Fischl wrote: > probably

Re: [Freesurfer] Definition of Surface Area Metric

2012-04-22 Thread Bruce Fischl
Hi Dhinakaran it can be the area of any surface. We generate both the white and pial surfaces by default (I think the white is named [lr]h.area while the pial is [lr]h.area.pial cheers Bruce On Mon, 23 Apr 2012, Dhinakaran Chinappen wrote: Dear Freesurfer Experts, Would you mind clarifyi

[Freesurfer] Definition of Surface Area Metric

2012-04-22 Thread Dhinakaran Chinappen
Dear Freesurfer Experts, Would you mind clarifying what the measure of surface area anatomically means? Is it the area of the pial surface? Thanks in advance, Dhinakaran. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.ha

Re: [Freesurfer] mris_expand not working since upgrading to v.5.1.0

2012-04-22 Thread Bruce Fischl
Hi Andrew, I just tried this and it worked fine for me. If you tell me what os/hardware you are running on I'll send you a current binary and you can see if that works. cheers Bruce p.s. do you look at the surfaces via: freeview -f lh.white lh.white.expanded On Fri, 20 Apr 2012, Andrew C

Re: [Freesurfer] bbregister for fmri FEAT data

2012-04-22 Thread Erlend Hodneland
Hi again, the registration looks fine in tkregister2, but is apparently wrong in fslview (and also mricron). See the attached files (as link from http://vedlegg.uib.no/?id=399ad2cce1a3138f8eb4f6a06f4acfc4) showing screenshots of fslview and tkregister2. How can this be explained, and how can we v