Re: [Freesurfer] Watershed gca atlas

Hi Vincent look all algorithms, sometimes that piece fails, particularly if the anatomy in question is an outlier. cheers Bruce On Sat, 24 Mar 2012, Vincent wrote: I noticed in this skull strip tutorial that sometimes when adjusting the watershed threshold the -no-wsgcaatlas option is use

[Freesurfer] Watershed gca atlas

I noticed in this skull strip tutorial that sometimes when adjusting the watershed threshold the -no-wsgcaatlas option is used. I understand that it means that the atlas, which is used to assist in detecting physical features whil

Re: [Freesurfer] fitting a priori ROI masks to freesurfer

Hi Sonya you are probably better asking the AFNI folks how to output a freesurfer label. I'll cc Ziad on this so he can chime in. cheers Bruce On Fri, 23 Mar 2012, sonya kaur wrote: > Dear all,I have an a priori ROI mask previously created in AFNI for > functional data. My hypothesis requires