Re: [Freesurfer] memory allocation error with mris_register

2012-01-21 Thread Arno Klein
thank you -- this worked! cheers, @rno On Fri, Jan 20, 2012 at 6:43 PM, Bruce Fischl wrote: > you can just rerun the mris_sphere command that is in the recon-all.log > (or recon-all.cmd) > > cheers > Bruce > > On Fri, 20 Jan 2012, Arno Klein wrote: > > >> dear bruce, >> you're right -- i am ab

Re: [Freesurfer] Pial surface and cerebellum

2012-01-21 Thread Bruce Fischl
Hi Mahinda, I believe that the intent of the brain.finalsurfs.mgz is to allow you to make edits that are only for the ?h.white/?h.pial surface placement, so you should be able to erase the whole cerebellum with no impact on the measures. cheers Bruce On Sat, 21 Jan 2012, Mahinda Yogarajah

[Freesurfer] Pial surface and cerebellum

2012-01-21 Thread Mahinda Yogarajah
Dear Freesurfer Experts, This might be a very basic question, and sorry for posting again, but I would be grateful for any advice. I have read the advice on the wiki regarding what to do when pial surfaces extend into the cerebellum. I had a few questions to clairfy things: 1) If I have made ot