Re: [Freesurfer] dt_recon registration

Hi Antonella, 1) Why I don't have in my $FREESURFER_HOME/subjects the cvs_avg35/mri/norm.mgz? In my subjects directory I only have my subjects and nothing else. How can I get the  cvs_avg35/mri/norm.mgz? $FREESURFER_HOME is different from your $SUBJECTS_DIR. Could you double check? 2) D

Re: [Freesurfer] Amazon EC2 Version of FreeSurfer 5.1 Available

It would be great if Freesurfer maintained an official AMI. One important reason to do so is security. If the AMI is maintained by the organization, then people can feel reassured that their data is not being downloaded to a compromised instance, not that any on this board would have such malicious

Re: [Freesurfer] dt_recon registration

Dear Lilla, Thank you very much for your valuable help. I still have few more questions and I will appreciate  if you can further help me. 1) Why I don't have in my $FREESURFER_HOME/subjects the cvs_avg35/mri/norm.mgz? In my subjects directory I only have my subjects and nothing else. Ho

Re: [Freesurfer] Freesurfer - problem with automatic labeling of V1 using the Hinds method in 5.1.0

Hi Andrew, Glad it's not just me! I'm still not sure whether this is a generic problem with version 5.1.0 (which I use) or a local problem. I can only find a rather inelegant hack. What I do is complete the recon-all (5.1.0) and then run a bunch of steps using mris_spherical_average from versio