If you know Python, you can likely do this pretty easily with tools from the
PySurfer package: http://pysurfer.github.com/
(Check out surfer.io.read_annotation).
If you're just using the io routines, you won't need the somewhat heavy
Mayavi visualization dependencies. You should be able to read
it wouldn't be that hard to put something together if you want to avoid
matlab. Spec out what you need and send me a sample, maybe on Bert
Bruce
On Sat, 8
Oct 2011, Pedro Paulo de Magalhães Oliveira Junior wrote:
Thanks.
I suppose I can't do this without matlab. Right?
-- iOS 5.0
Em 08/10
Thanks.
I suppose I can't do this without matlab. Right?
-- iOS 5.0
Em 08/10/2011, às 19:29, Bruce Fischl escreveu:
> there is a write_annotation.m file you can use
> On Sat, 8 Oct 2011, Anderson Winkler wrote:
>
>> ops, it seems the comments inside the dpxwrite.m no longer reflect what it
>>
there is a write_annotation.m file you can use
On Sat, 8 Oct 2011, Anderson
Winkler wrote:
ops, it seems the comments inside the dpxwrite.m no longer reflect what it
does. You probably don't need this, but anyway, the version attached is more
up-to-date.
Anderson
On 08/10/11 17:28, Anderson
ops, it seems the comments inside the dpxwrite.m no longer reflect what
it does. You probably don't need this, but anyway, the version attached
is more up-to-date.
Anderson
On 08/10/11 17:28, Anderson Winkler wrote:
Hi Pedro,
There is probably a way to do that using FS tools from the command
Hi Pedro,
There is probably a way to do that using FS tools from the command line,
but the attached script should do the same. The result is a
"data-per-vertex" file, which is the same as the .asc files from
mris_convert. There is no geometry input, hence the vertex coordinates
are all set to
I need to create a file where I have the parcellation value (structure name)
per vertex.
I've tried mris_convert --annot
/Applications/freesurfer/subjects/bert/label/lh.aparc.annot
/Applications/freesurfer/subjects/bert/surf/lh.pial parc.asc
But I get the error: ERROR: unknown file annot file typ
Hi Michelle
if you visualize your cuts on the inflated surface by loading the patch
into tksurfer, then clicking the "I" button. you can see that the cut
down the calcarine doesn't reach either the occipital pole or the end of
the patch. This makes it impossible for the flattening to find a so
