Re: [Freesurfer] Problem writing talairach.m3z in mri_ca_register

2011-09-17 Thread Bruce Fischl
Hi Lauge How much ram do yo have? Gzip need a lot Bruce On Sep 17, 2011, at 3:30 PM, Lauge Emil Borch Laurs S0rensen wrote: > Lauge ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurf

[Freesurfer] Problem writing talairach.m3z in mri_ca_register

2011-09-17 Thread Lauge Emil Borch Laurs S0rensen
Hi, I am running FreeSurfer on ADNI data and get an error when mri_ca_register attempts to write to transforms/talairach.m3z using gzip. I run the full FreeSurfer pipeline using a bash script containing the following: #!/bin/bash export FREESURFER_HOME=/usr/local/freesurfer source $FREESURFER_

Re: [Freesurfer] ICV differences from version 5.0 to 5.1

2011-09-17 Thread Ed Gronenschild
Jon, The reason is that already in one step earlier in the pipeline, the nu-correct stage, a difference arises. See thread on "Differences in nu.mgz between v5.0.0 and v5.1.0" Cheers, Ed Hi, We have noticed differences in Talairach registration (and therefore ICV estimates) in some of our