[Freesurfer] Optimization ITI

2011-06-09 Thread daniel geisler
Dear Freesurfers, We intend to implement a probabilistic reversal learning task (Hampton et al, 2006) in an ER-design. Each of its 120 trials matches the following pattern: |< Response >|<-- Fixation -->|<-- Feedback -->| The phases of Response and Feedback take 2 sec and 1 sec, respecti

[Freesurfer] functional mask conversion from talairach space

2011-06-09 Thread Sam Cartmell
Hello Freesurfers, Using FS 4.5, I am attempting to do an ROI analysis based on activations seen in the group contrast. I'd like these ROI's to be a sphere around the peak voxel of each activation. Using a matlab program written by a colleague, I was able to generate spherical masks around the p

Re: [Freesurfer] Regarding: "mri_segstats error"

2011-06-09 Thread Douglas N Greve
Try cd ${SUBJECTS_DIR} then run the command doug Joel Bruss wrote: > I ran across the same issue reported in: > > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg17687.html > > The initial question was why mri_segstats did not work and complained: > > "Error: could not open stats/as

[Freesurfer] Regarding: "mri_segstats error"

2011-06-09 Thread Joel Bruss
I ran across the same issue reported in: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg17687.html The initial question was why mri_segstats did not work and complained: "Error: could not open stats/aseg/stats for writing" If you try to, literally, copy and paste the same comm

Re: [Freesurfer] Middle line issue

2011-06-09 Thread Wayne Su
Hi Bruce, I uploaded the files, please take a look. Thank you. https://www.nmr.mgh.harvard.edu/facility/filedrop/showgroup/24636/1/67c10f7d 3c9e62a7fec999c2f314ee08 Wayne On 08/06/11 7:01 PM, "Bruce Fischl" wrote: > That is odd, not sure why. If you upload the subject we will take a look > Bru

Re: [Freesurfer] Reading ascii files with tksurfer

2011-06-09 Thread Bruce Fischl
Hi Emma, I thought tksurfer could read the ascii surfaces directly. If not, you can always use mris_convert to change them to binary. cheers Bruce On Thu, 9 Jun 2011, Emma Robinson wrote: > Hi, > > Can I read ascii surface files using tksurfer? I have tried loading > them as surfaces and overl

[Freesurfer] Reading ascii files with tksurfer

2011-06-09 Thread Emma Robinson
Hi, Can I read ascii surface files using tksurfer? I have tried loading them as surfaces and overlays but without success. Alternatively is there a tool for vtk to surface conversion? Thanks in advance Emma Robinson ___ Freesurfer mailing list Freesur