Hi Douglas and Bruce,
I have updated my freesurfer version to 5.0.0. But I still have error when I
tried to run bbregister. The error information is as follows"
My command: bbregister --s bert --mov T2_0145_file1.nii --reg register.dat
--init-fsl --t2 --o outvol
Error information:
FREESURFER_HO
The full name on my machine is: freesurfer-centos4_x86_64-v4.1.0
So I think the version is 4.1.0
Best,
Xiaoying
2011/5/22 Bruce Fischl
> No, it's not the same what version are you running?
>
>
>
> On May 21, 2011, at 11:26 PM, Xiaoying Tang wrote:
>
> Hi Douglas,
>
> Thanks a lot for your sug
No, it's not the same what version are you running?
On May 21, 2011, at 11:26 PM, Xiaoying Tang wrote:
> Hi Douglas,
>
> Thanks a lot for your suggestion.
>
> It is really strange that I don't find bbregister in the file foler of the
> freesurfer on my machine. But I find a program named "f
Hi Douglas,
Thanks a lot for your suggestion.
It is really strange that I don't find bbregister in the file foler of the
freesurfer on my machine. But I find a program named "fslregister". Is that
the same?
If they are different, is it that I need to update my version of freesurfer
so that I can
If you have a T1 that you've run through FS and are happy with the skull
strip, then you can register your T2 with the FS anatomical (with
bbregister), then map the skull stripped T1 into the T2 space
(mri_vol2vol), then apply it to the T2 (mri_mask).
doug
On 5/21/11 7:27 PM, Bruce Fischl wrot
Hi Xiaoying,
unfortunately there isn't. I would recommend BET (from the FSL).
cheers
Bruce
On Sat, 21 May 2011,
Xiaoying Tang wrote:
> Hi All,
>
> I am wondering whether there is any way to skull strip a T2 image using
> freesurfer. I tried to use the same way as for skullstripping T1 image, bu
Hi All,
I am wondering whether there is any way to skull strip a T2 image using
freesurfer. I tried to use the same way as for skullstripping T1 image, but
always failed.
I would be most grateful if someone can give me some suggestion.
Best,
Xiaoying Tang
I think you might need to add an extra carriage return at the end of the
last line. in other words, your cursor should go an empty line at the
bottom of the file.
n.
On Sat, 2011-05-21 at 14:34 +0200, Tetiana Dadakova wrote:
> Dear list,
>
> I am trying to load qdec.table.dat file using qdec,
Dear list,
I am trying to load qdec.table.dat file using qdec, and get the following error:
Loading data table
/Applications/freesurfer/subjects/group_analysis/qdec/qdec.table.dat...
QdecDataTable::Load: will attempt to open as Mac text file...
Number of columns: 3
fsid column:1
Number o
