Re: [Freesurfer] (no subject)

Hi Gio have you used a command line Unix before? cheers Bruce On Fri, 17 Dec 2010, Giovanni Rodriguez wrote: > To Whom It May Concern: > > My name is Giovanni Rodriguez, I am a high school student working at > the University of Miami in a research lab. My lab professor told me to work > throug

[Freesurfer] (no subject)

To Whom It May Concern: My name is Giovanni Rodriguez, I am a high school student working at the University of Miami in a research lab. My lab professor told me to work through the basics on my own and to download the tutorial and dataset. Is there anyway that I could find a dumb proof, step by

Re: [Freesurfer] Difficulty running FreeSurfer

Hi Nisser, On Dec 17, 2010, at 10:14 , Nisser ali umar wrote: > Hi Sebastian, > > Thank you very much for the input. We tried but weren't able to get the > problem resolved. Can you please shed more light on what you meant by > "replace the directory in FREESURFER_HOME, and define your sub

Re: [Freesurfer] wm and pial edits

Hi Larissa, autorecon2-wm should be a superset of autorecon2-pial, so you shouldn't have to run both. cheers Bruce On Fri, 17 Dec 2010, Larissa Stanberry wrote: > Dear Freesurfers, > > Can I run recon-all -autorecon2-wm and recon-all -autorecon2-pial on > the same subject at the same time? Or c

Re: [Freesurfer] Trying to run recon-all on old raw data

Hi Lisa, unless you can get the data into a format we support I'm not sure there's much we can do. Have you tried reading it into matlab and writing it out using our matlab functions (e.g. MRIwrite or save_mgh)? cheers Bruce On Fri, 17 Dec 2010, Lisa F. Akiyama wrote: > Hi Bruce, > > MIPAV d

[Freesurfer] wm and pial edits

Dear Freesurfers, Can I run recon-all -autorecon2-wm and recon-all -autorecon2-pial on the same subject at the same time? Or can I perhaps do smthg like recon-all -autorecon2-wm -autorecon2-pial? Many thanks Larissa ___ Freesurfer mailing list Frees

Re: [Freesurfer] Trying to run recon-all on old raw data

Hi Bruce, MIPAV did allow me to save it in other formats like Nifti and Analyze, but it only created corrupted files. Thanks. Best, Lisa __ Lisa F. Akiyama Research Study Assistant Institute for Learning & Brain Sciences (I-LABS) University of Washington P Please

Re: [Freesurfer] Difficulty running FreeSurfer

Hi   Sebastian, Thank you very much for the input. We tried but weren't able to get the problem resolved. Can you please shed more light on what you meant by "replace the directory in FREESURFER_HOME, and define your subjects directory", please? Once more, thank you very much. Nisser