Re: [Freesurfer] Trying to run recon-all on old raw data

2010-12-13 Thread Bruce Fischl
can you use MIPAV to convert it to nifti? On Mon, 13 Dec 2010, Lisa F. Akiyama wrote: > Hi Bruce, > > No, I was not able to successfully converting it to a different format using > mri_convert. > A similar error appeared. > > When I read the tag information using MIPAV, it seems like it contains

Re: [Freesurfer] Trying to run recon-all on old raw data

2010-12-13 Thread Lisa F. Akiyama
Hi Bruce, No, I was not able to successfully converting it to a different format using mri_convert. A similar error appeared. When I read the tag information using MIPAV, it seems like it contains plenty of information (listed in dicom tag format) to know the orientation/positioning of the subjec

Re: [Freesurfer] Trying to run recon-all on old raw data

2010-12-13 Thread Bruce Fischl
Hi Lisa, can you convert it to one of our supported formats? But even then, how will you know left from right? Bruce On Mon, 13 Dec 2010, Lisa F. Akiyama wrote: > Hello FreeSurfer experts, > > I am trying to run recon-all on old (back from late 1990's) raw MRI data. > Each slice is in a raw for

[Freesurfer] Trying to run recon-all on old raw data

2010-12-13 Thread Lisa F. Akiyama
Hello FreeSurfer experts, I am trying to run recon-all on old (back from late 1990's) raw MRI data. Each slice is in a raw format. When I try to execute recon-all, I get the error shown below: todd:~$ recon-all -subjid A_H -i > $SUBJECTS_DIR/adults_jp/A_H/slices/HA970313a1997031316500756 Subject

[Freesurfer] Новое сообщение

2010-12-13 Thread Vovan
http://samec.org.ua/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-ma

Re: [Freesurfer] Convert multiple analyze files to one nifti file

2010-12-13 Thread Rita Loiotile
Is mri_concat also my best option for converting a series of dicoms to one nifti? The command seems to be taking an inordinately large amount of time to complete... On 12/3/10, Douglas N Greve wrote: > I don't know what a 132 data is. Is this complex data? In any event, it > looks like we don't r

Re: [Freesurfer] previous release compatibility and reliability set up

2010-12-13 Thread Bruce Fischl
Hi Scott, you definitely shouldn't mix results from different versions. As for your 2nd question, I guess if there are no manaul interventions required prior to the stage that you are copying after (e.g. talairach adjustment) you should be ok. cheers Bruce On Sun, 12 Dec 2010, Scott Sorg wro